PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0043600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NF-YB | ||||||||
Protein Properties | Length: 214aa MW: 23094.8 Da PI: 4.5298 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 163.4 | 3.2e-51 | 42 | 136 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPianv+rim++vlPa+aki++daket+qec se+isfvtsea+++c++e+rk i+++dllwa+++lGf+dy++pl++yl++yr++eg Spipo5G0043600 42 VREQDRFLPIANVIRIMRRVLPAHAKIADDAKETIQECLSEYISFVTSEANERCKQEQRKIITAEDLLWAMSQLGFDDYLQPLTLYLQRYRDVEG 136 69*******************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-46 | 40 | 137 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.02E-35 | 45 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-25 | 48 | 112 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.7E-16 | 76 | 94 | No hit | No description |
PRINTS | PR00615 | 4.7E-16 | 95 | 113 | No hit | No description |
PRINTS | PR00615 | 4.7E-16 | 114 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAGGAAASDK KDADQSASNN TTLTEVALAG MEAADGGEGP AVREQDRFLP IANVIRIMRR 60 VLPAHAKIAD DAKETIQECL SEYISFVTSE ANERCKQEQR KIITAEDLLW AMSQLGFDDY 120 LQPLTLYLQR YRDVEGGSIH RDALLTPLKR AASDAGLGPT GSAATPGEVE IIPERSEGAE 180 SSQARACQGT PKDGFQRYAP YNMDRVKNMA SDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-56 | 37 | 133 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021766652.1 | 2e-58 | nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A0K9PD88 | 5e-57 | A0A0K9PD88_ZOSMR; Uncharacterized protein | ||||
STRING | XP_010686691.1 | 1e-56 | (Beta vulgaris) | ||||
STRING | A0A087GNA2 | 1e-56 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-59 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0043600 |