PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo5G0043500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 202aa MW: 21808.1 Da PI: 4.695 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.4 | 1e-53 | 57 | 153 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrf+Pianv+rim++vlP++aki++daketvqecvse+isfvtsea+++cq+e+rkti+++dllwa+++lGf+dyv+pl+++l++yre+eg Spipo5G0043500 57 VREQDRFMPIANVIRIMRRVLPTHAKIADDAKETVQECVSEYISFVTSEANERCQQEQRKTITAEDLLWAMSKLGFDDYVQPLTLFLQRYREAEG 151 69********************************************************************************************9 PP NF-YB 96 ek 97 ++ Spipo5G0043500 152 DN 153 96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.5E-50 | 56 | 167 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-37 | 60 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.4E-26 | 63 | 127 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.9E-17 | 91 | 109 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 94 | 110 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.9E-17 | 110 | 128 | No hit | No description |
PRINTS | PR00615 | 3.9E-17 | 129 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MYELWLIHLV GAGGAPSEDR NGVTSPGDKN DGRYDSSNDV GEGAPATIAG SGGGPVVREQ 60 DRFMPIANVI RIMRRVLPTH AKIADDAKET VQECVSEYIS FVTSEANERC QQEQRKTITA 120 EDLLWAMSKL GFDDYVQPLT LFLQRYREAE GDNRGGTSTG AANGEGEPMP GRYYRDGAAS 180 SQASTSQGTP KDGFHPFAPF K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-58 | 52 | 148 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932686.3 | 8e-64 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q84W66 | 3e-58 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q9X1G5 | 2e-62 | A0A3Q9X1G5_ELAGV; Leafy cotyledon 1 | ||||
STRING | GSMUA_Achr3P04310_001 | 7e-61 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-60 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo5G0043500 |