PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0037000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 882aa    MW: 95992.8 Da    PI: 6.9449
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0037000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-182885457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+l+ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Spipo5G0037000 28 YVRYTPEQVEALERLYSECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85
                    6789****************************************************97 PP
2START149.82.5e-471743812204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++++++ka+ ++  Wv +  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W + +++ ++  vi +g  g+++l+
  Spipo5G0037000 174 IAEETLTAFLSKATGTAIDWVPMLGMKPGPDSIGIITVSHNCCGVAARACGLVSLEPT-KVAEILKDRPSWHRECRRFDVRSVIPTGngGIVELI 267
                     58999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +++a++++++ Rdf+++Ry+  l++g++vi+++S++ ++  p    +++++Rae+lpSg+li+p+++g+s v++v+hvdl+++ ++++lr+l+
  Spipo5G0037000 268 YIQTYAPTTIASaRDFWTLRYTTGLEDGGLVICERSLTATTGGPIgppTPNFARAEMLPSGYLIRPCEGGGSMVHIVDHVDLDAAAVPEVLRPLY 362
                     ******************************************999999*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s    ++k ++a+l++ +
  Spipo5G0037000 363 ESPKLLAQKVTLAALRHIR 381
                     **************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5162286IPR001356Homeobox domain
SMARTSM003893.2E-152490IPR001356Homeobox domain
SuperFamilySSF466891.2E-162688IPR009057Homeodomain-like
CDDcd000863.37E-162787No hitNo description
PfamPF000462.5E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-182985IPR009057Homeodomain-like
CDDcd146863.89E-679118No hitNo description
PROSITE profilePS5084823.378164392IPR002913START domain
SMARTSM002341.9E-40173383IPR002913START domain
PfamPF018522.0E-44174381IPR002913START domain
Gene3DG3DSA:3.30.530.208.5E-20174355IPR023393START-like domain
SuperFamilySSF559618.79E-32174384No hitNo description
PfamPF086702.7E-38705880IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MSMVGHQQHH LGKDGGGGGK GQLDTGKYVR YTPEQVEALE RLYSECPKPS SMRRQQLIRE  60
CPILANIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSLL  120
TYDNGFMRQQ LHTAPASTTD NSCESVVTSG QHPQNTATQR PQQDANNPAG LLVIAEETLT  180
AFLSKATGTA IDWVPMLGMK PGPDSIGIIT VSHNCCGVAA RACGLVSLEP TKVAEILKDR  240
PSWHRECRRF DVRSVIPTGN GGIVELIYIQ TYAPTTIASA RDFWTLRYTT GLEDGGLVIC  300
ERSLTATTGG PIGPPTPNFA RAEMLPSGYL IRPCEGGGSM VHIVDHVDLD AAAVPEVLRP  360
LYESPKLLAQ KVTLAALRHI RQISQETSGE VVNAGGHQPG VLRAFSQRLS RGFNDAINGF  420
PDDGWSLLGS EGAEDVIISV NPSPSKLVGA NISSPAVLSS FTGGILCAKA SMLLHNVPPP  480
QLVRFLREHR SEWADCGVDA YAAASLKPNP ILPGIRAGGT FLGGQVILPL AHTVDHEEFL  540
EVIRLEGHGF SHDDVVLPRD MYLLQLCSGL DDNVMSASAQ LVFASIDESF ADDAPLLPSG  600
FRVISLDSKT GTPMTNRTLD LASTLEVGSA APARPSSEGG ANRAILTIAF QFSFEHHLRD  660
HVAAMARQYV RSVVASVQRV AMAIAPHLGS HLAPKSPPGS PEALTLAHWI SRSYRFHTGV  720
ELLKAADPPA SDSLLKLMWH HPDAIMCCSF KSNVGSSSFL LPSLFSFLEL LISIRRWHLN  780
SVQAPLPVCM FANQAGLDLL ETTLVALQDL TLDKVFDEAG QKTLFAEFSR IMQQGLAYLP  840
AGICMSSMGR PASYEQAVAW RVLNEDANHY LAFMFVNWSF V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923678.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1D1ZIN70.0A0A1D1ZIN7_9ARAE; Homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]