PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0031500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 202aa    MW: 21376.4 Da    PI: 9.7541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0031500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-164594255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa a++ a   l+g
  Spipo5G0031500 45 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAAHAYDIAVYHLRG 94
                    69*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-3144103IPR001471AP2/ERF domain
PROSITE profilePS5103222.845102IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2145103IPR016177DNA-binding domain
SMARTSM003803.4E-3745108IPR001471AP2/ERF domain
PfamPF008471.9E-94594IPR001471AP2/ERF domain
CDDcd000181.08E-2445103No hitNo description
PRINTSPR003676.9E-124657IPR001471AP2/ERF domain
PRINTSPR003676.9E-1284104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEGDCCSTSE DSGGRSSPSE GKAGGGGEGM GGAAAAAAGG GGGRQYRGVR MRKWGKWVAE  60
IREPNKRSRI WLGSYSTAVA AAHAYDIAVY HLRGRSARLN FPNELPAEGE DGDGTGGQRH  120
GGGGGESEAL SAALIRKKAT EVGARVDAMH AGTLGRRHHH VYNRPRRNQP QAEAAEKDRE  180
RRPMNPDLNR RPSPESSDNE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1543102363ATERF1
3gcc_A1e-1543102363ATERF1
5wx9_A2e-15451051475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234824e-38AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAK1077754e-38AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence.
GenBankAP0025364e-38AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149624e-38AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126144e-38CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankKP2296614e-38KP229661.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF38) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387797.12e-63PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ9FH942e-40ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM0UCQ26e-62M0UCQ2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP26940_0019e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-32DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]