PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0031400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 336aa    MW: 38032.2 Da    PI: 9.3551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0031400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-1518103597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     l++s v+   r ++p+kf+    g    +  +   d+s  +W+vkl  +k+++++++++GW+eF++a+ L++gDf+vF+++g+s+f  +v vf
  Spipo5G0031400  18 LIKSVVNIDLRYSVPRKFVVLLRGR--LPEAVE-LDSSEGRWRVKL--KKTDCTTFFEEGWEEFARAQFLEAGDFLVFRFNGKSRF--KVLVF 103
                     5556666666789999999777555..454466.5668889*****..*******************************9998888..77666 PP
2B344.33.1e-14229322198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f++v ++s+ + ++ l++p +fa+e+   + +++ ++l++  g  Wev +  r++++   +++GW++F+  n+L+ gD++vF++  r s + ++v
  Spipo5G0031400 229 FLSVIKRSHISPKSFLTVPWRFAAEFF--PGKGRRVVLRSAAG-DWEVSC--RNYRRLSHFQSGWRSFAVGNHLDIGDVLVFEFAARgSYRCMNV 318
                     677888899999999***********5..33455799988666.7*****..99999999***********************998878888899 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++fr
  Spipo5G0031400 319 TIFR 322
                     9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.29614106IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1716108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-1817108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-1418103No hitNo description
SMARTSM010196.6E-818106IPR003340B3 DNA binding domain
PfamPF023621.9E-1220102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-19222322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-16223323IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-15227322No hitNo description
PROSITE profilePS5086312.492229324IPR003340B3 DNA binding domain
PfamPF023628.9E-12229322IPR003340B3 DNA binding domain
SMARTSM010191.2E-10229324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLKSGECNIE EKEKWKDLIK SVVNIDLRYS VPRKFVVLLR GRLPEAVELD SSEGRWRVKL  60
KKTDCTTFFE EGWEEFARAQ FLEAGDFLVF RFNGKSRFKV LVFGPSGCEK CSAAAAGSLR  120
HGDLERENPT RACSAAVPKM AIRLDEPEDS PQESGGLWRC FSKGENGRRC RWRQWGNREA  180
DEAEELADDE TTRSSYPLHV VSRRGSISAE ERERSMRLVA TVKPAHPAFL SVIKRSHISP  240
KSFLTVPWRF AAEFFPGKGR RVVLRSAAGD WEVSCRNYRR LSHFQSGWRS FAVGNHLDIG  300
DVLVFEFAAR GSYRCMNVTI FRVGEQLPAA PSVST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1320232722146B3 domain-containing transcription factor VRN1
4i1k_B3e-1320232722146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-27B3 family protein