PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0028100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 19729.1 Da PI: 8.29 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 8 | 56 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +gr++AeIrd ++ ++r++lg+f+++e Aa+a++aa+++l+g Spipo5G0028100 8 FRGVRRRP-WGRFAAEIRDpWK----KTRVWLGTFDSPEAAARAYDAAALALRG 56 79******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.749 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-34 | 7 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.94E-19 | 8 | 66 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-22 | 8 | 65 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 8 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 8 | 19 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-14 | 8 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
GSVKEMAFRG VRRRPWGRFA AEIRDPWKKT RVWLGTFDSP EAAARAYDAA ALALRGPKAK 60 TNFPSSGAAA TAAPPLPIHR PPPQKLRPTT SGYSSTVDSF SGLRRSCSTS QLRPSISRPP 120 FVVDGDGGGD GDCHSDCGSS SSVVDDGDIA ASSSFRHQPQ APPPAFDLNL LPLGGDDDCC 180 QCTALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 8 | 66 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229640 | 1e-41 | KP229640.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF17) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020694474.1 | 2e-51 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9SXS8 | 5e-32 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A1D1YKK7 | 4e-52 | A0A1D1YKK7_9ARAE; Ethylene-responsive transcription factor 3 (Fragment) | ||||
STRING | XP_008801873.1 | 2e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 3e-25 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0028100 |