PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0016800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 173aa MW: 18924 Da PI: 5.1781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 153 | 169 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+Cp Cgk+F+r n++ Spipo5G0016800 153 YSCPVCGKTFNRYNNMQ 169 99*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 153 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MTDPYTNLFQ GYFSRYPSPL QPFQHVRINR NQTSITTFAV QPPPPPSPPL REALPLLNLN 60 EGDSPCTSFE ETQGDGRRKE PDGDEDSLAV NLHIGLPSPT PADVIPRVSS SSSTADDERE 120 APTGNPNAAI GRVNRGQYWI PTPTQILIGP TQYSCPVCGK TFNRYNNMQV RG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008780469.1 | 6e-47 | zinc finger protein WIP2-like | ||||
Refseq | XP_009391887.1 | 2e-45 | PREDICTED: zinc finger protein WIP2-like | ||||
TrEMBL | A0A1D1ZJL0 | 6e-44 | A0A1D1ZJL0_9ARAE; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A2H3X9K0 | 1e-45 | A0A2H3X9K0_PHODC; zinc finger protein WIP2-like | ||||
STRING | XP_008780469.1 | 2e-46 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15363 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 6e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0016800 |