PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0015600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 302aa    MW: 30972.4 Da    PI: 9.9606
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0015600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-07106131227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  Spipo5G0015600 106 KTRMCNKYGTAEGCKFGDKCHFAHGE 131
                     899999999999************96 PP
2zf-CCCH28.33.1e-09268292126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C +f + G C +G+rC+FaHg
  Spipo5G0015600 268 YKTKMCENFGK-GSCTFGARCHFAHG 292
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0424169IPR000571Zinc finger, CCCH-type
SMARTSM003561.74168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-64267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-74366IPR000571Zinc finger, CCCH-type
PfamPF146081.84966No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-14100134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8102136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.1104131IPR000571Zinc finger, CCCH-type
PfamPF146080.018112130No hitNo description
SuperFamilySSF547913.19E-15162241IPR004088K Homology domain, type 1
SMARTSM003224.4E-11169239IPR004087K Homology domain
PROSITE profilePS5008414.634170234IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.5E-16170239IPR004088K Homology domain, type 1
PfamPF000132.3E-11172236IPR004088K Homology domain, type 1
CDDcd001051.02E-13174234No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-15266299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8266298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422267294IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4267293IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-6268292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDTRAAARKR GRVADAALNG GSGAAGLKKV KETESFQPGI GSKSKPCTKF FSTSGCPFGE  60
GCHFLHYVPG GINAVSHMTS LGNSTARNPM AAPPYSDGPL PPPAVKTRMC NKYGTAEGCK  120
FGDKCHFAHG ERELGMPIVP AHGRSGSAGR LDPVPLPPAG HGAAASFGAS ATAKISVDAS  180
LAGAIIGKGG VNTKQICRIT GAKLAIREHE ADSTLRNIEL EGTFDQIKQA SAMVRELILN  240
LTGGMPPSLP PAKAHAAAAG LHSAASNYKT KMCENFGKGS CTFGARCHFA HGAADLRKPA  300
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805470.11e-137zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-115C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1D1YAL01e-137A0A1D1YAL0_9ARAE; Zinc finger CCCH domain-containing protein 14
STRINGXP_008805470.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-68C3H family protein