PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0004700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | SBP | ||||||||
Protein Properties | Length: 229aa MW: 24506.2 Da PI: 8.3551 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 47.6 | 4.4e-15 | 26 | 55 | 48 | 77 |
SEEETTT--SS--S-STTTT-------S-- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77 rfh lsefDe+krsCr+rLa+hn+rrrk+q Spipo5G0004700 26 RFHLLSEFDEAKRSCRKRLAEHNRRRRKSQ 55 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.588 | 1 | 54 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-8 | 26 | 53 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.08E-12 | 26 | 58 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-5 | 26 | 41 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MASQESQTLV RSPEKHLTVI SVWFLRFHLL SEFDEAKRSC RKRLAEHNRR RRKSQFSPTM 60 STAGSDRSNP TNGSISSTDK NRLPSSNPTR NDAAAAKYLI PPPATSGCTI SGISQNNASL 120 DDHKTAAHLW NGPSLSLGGG GAAAASEKGP CFDFLPHYPP QMPSWVFVSE DNNNTSGSQR 180 SSSSSSSLFL HSPALFCNTP AEASQSASTV AEANLLQLGQ GLLEVDFI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP41746 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 2e-11 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0004700 |