PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0000500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 327aa    MW: 35568.5 Da    PI: 6.9953
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0000500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-0720341125
                    GTS--TTTTT-SS-S CS
         zf-CCCH 11 rtGtCkyGdrCkFaH 25
                    ++G+C+yGdrCkF H
  Spipo5G0000500 20 ASGHCQYGDRCKFLH 34
                    68************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.8032037IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-52134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-52135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEEHCVNEGY DNPQLSLRSA SGHCQYGDRC KFLHTTLQQP KPSTFGFGVQ NTSPFLGINQ  60
QSQQQKPNPF GFGVQSASQS IGSHSPTQPQ PFINKWTRSS AAASTKPSKQ GDAQPQGAHQ  120
KPCDIVGDVS YEELRAAAYE DARKGLSLQT IVERERNLLN IKLLEFDNLR HKPQLVLQSP  180
TSARPSFPPV ITQHASSVTA QSHITPVTSS FSQPGASANI GPASLFQVQN QTSSVFGMKF  240
ESSGLSFGTS MGTQASQFSH PVQPMLNSNN STFRLPSRGD DQTVTGNIPS QPLESGPLVE  300
RKQEINPEEC AIWLKKEWEI GENEGC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796916.11e-75zinc finger CCCH domain-containing protein 46
TrEMBLA0A1D1XJL23e-95A0A1D1XJL2_9ARAE; Zinc finger CCCH domain-containing protein 46
STRINGXP_008796918.13e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94472829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-29C3H family protein