PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0116000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 464aa    MW: 49278.9 Da    PI: 6.1024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0116000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06213234223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C +Cgk F+r  nL+ H+r H
  Spipo4G0116000 213 FCLICGKGFKRDANLRMHMRGH 234
                     5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.06E-5210237No hitNo description
SMARTSM003550.012212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-5214238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035574264297IPR015880Zinc finger, C2H2-like
SMARTSM0035519302324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEYRQAPNPE APMDPPRTLC SEQEYARFDR TDHDRSSGEM KQESHFSPAL LHEGPSILCD  60
PEAVLSNLSF LEQKIHQVQH AVRSIMSPEE QSVAGGTHEL AMKQQLMAAD LTSIIIQLIS  120
TAGTLLPSLT GGSSITGSSA GLLSSPPALA GFNAAAAAAA AGEPTAVEDH HDEKDGEGDG  180
DGEGDGDGES LLAGTYEVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH MRGHGDEYKT  240
PAALAKPPGA GKEQSSEQGP LRRYSCPFLG CKRNKEHKKF QPLKTILCVK NHYKRSHCAK  300
SYTCSRCNSK KFSVMADLKT HEKHCGRDKW VCSCGTTFSR KDKLFGHVSL FQGHAPALPI  360
GEVKGAAAPS DLGEASDSAA SGVDLGGGGG GGGAANVFDG KDLENDARLG LFSPVNFDSF  420
NFGGDAAEFP QPAFDAPDGS FPFFSSSMFG NYARKGGDNS TSN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021647541.11e-155protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_021647542.11e-155protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ943I61e-142STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A1D1XYN41e-170A0A1D1XYN4_9ARAE; Zinc finger protein STOP1
STRINGVIT_18s0072g00840.t011e-150(Vitis vinifera)
STRINGGSMUA_Achr5P01170_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-101C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]