PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0112900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27121.4 Da PI: 10.3015 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g Spipo4G0112900 37 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 86 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-22 | 37 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-13 | 37 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.778 | 37 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 37 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-36 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-12 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.13E-15 | 45 | 96 | No hit | No description |
PRINTS | PR00367 | 6.5E-12 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEPSTGVRMS MSSSGSESTV SGSSHSSYPA AERGGRRYRG VRQRPWGKWA AEIRDPHKAA 60 RVWLGTFETA EAAARAYDEA ALRFRGKRAK LNFPENVRLR PPGPVPPGSF LIPQNTPAAL 120 MTTASQTAAL PFTGFPATDM GDYLEYSRIL QGPGDLQRQP VSLLDQILYS PSPPLGSSPP 180 MADTSAPPSS SSSFPLLYAE HQRRRQQQLR QLQLQQHRQL GYTAPPEHQG DSGGLDFLPG 240 GFPPRPPST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 35 | 97 | 3 | 66 | ATERF1 |
3gcc_A | 3e-24 | 35 | 97 | 3 | 66 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC105318 | 2e-53 | AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence. | |||
GenBank | AP014961 | 2e-53 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 2e-53 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408302.2 | 8e-49 | PREDICTED: ethylene-responsive transcription factor ERF037-like | ||||
TrEMBL | A0A2I0W4W1 | 3e-43 | A0A2I0W4W1_9ASPA; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A444CBX5 | 3e-43 | A0A444CBX5_ENSVE; Uncharacterized protein (Fragment) | ||||
STRING | GSMUA_Achr8P08000_001 | 2e-43 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 6e-16 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0112900 |