PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0080800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ZF-HD
Protein Properties Length: 181aa    MW: 20216.3 Da    PI: 9.4563
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0080800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer47.15.6e-151312960
     ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRreveee 60
                    mps geegt +alkCaACgCHRnFHR+e e e
  Spipo4G0080800  1 MPS-GEEGTLEALKCAACGCHRNFHRKEAEGE 31
                    566.899*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.3E-13128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-10129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152312.007127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.45E-2199173IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-32107173IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-29112168IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MPSGEEGTLE ALKCAACGCH RNFHRKEAEG EAAASCDIYP YYHHLKGRRI IGQKGVLISG  60
AEAYGYSPAG NSLIPRPSPH HMIMPLGALQ TSESEEMEGG IGGGFSRAPP VKKRFRTKFT  120
PEQKEKMLDF AEKVGWRLQK QEESMVQQFC QEIGVKRRVL KVWMHNNKHN LAKKIPLQLE  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-241131701875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930367.11e-103zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-55ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2H3Z6U71e-100A0A2H3Z6U7_PHODC; zinc-finger homeodomain protein 4-like
STRINGXP_008808961.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.29e-54homeobox protein 31