PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0078000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 163aa    MW: 17578.1 Da    PI: 10.4407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0078000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-151564255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr+++ +g+Wv+e+r+p   gkr r +l++f tae Aa a++ a  +l+g
  Spipo4G0078000 15 RYKGVRRRR-WGKWVSEVRVP---GKRERLWLESFATAEAAAVAYDTAIFYLKG 64
                    6*****777.**********8...557*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-141576No hitNo description
Gene3DG3DSA:3.30.730.101.7E-241576IPR001471AP2/ERF domain
SMARTSM003801.7E-251582IPR001471AP2/ERF domain
PROSITE profilePS5103221.1531576IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-151577IPR016177DNA-binding domain
PfamPF008479.4E-91564IPR001471AP2/ERF domain
PRINTSPR003671.1E-71627IPR001471AP2/ERF domain
PRINTSPR003671.1E-73854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MNRLGDASGG GGEVRYKGVR RRRWGKWVSE VRVPGKRERL WLESFATAEA AAVAYDTAIF  60
YLKGPSAASA AGLNFPMMLP AGAWAGLSPR SIQKLASDRG LVADAELASG WLVPRRTPRE  120
KPPTVLGGSA TRGEKLVAEL PFDISVDDMN IYLQAGENPR FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-121682669ATERF1
3gcc_A1e-121682669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C9I83e-33ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1D1XI954e-42A0A1D1XI95_9ARAE; Ethylene-responsive transcription factor ERF019 (Fragment)
STRINGGSMUA_Achr3P21790_0011e-38(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-27ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]