PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0068700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 708aa    MW: 75517 Da    PI: 6.8577
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0068700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11292348155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Spipo4G0068700 292 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 348
                     57*******************4444.2455535555.779999**************98 PP
2AP246.78.1e-15391442155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Spipo4G0068700 391 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 442
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8292348IPR001471AP2/ERF domain
CDDcd000183.05E-19292358No hitNo description
SuperFamilySSF541719.81E-15292358IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-12293357IPR001471AP2/ERF domain
PROSITE profilePS5103217.319293356IPR001471AP2/ERF domain
SMARTSM003801.1E-22293362IPR001471AP2/ERF domain
PRINTSPR003673.8E-6294305IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17391452IPR016177DNA-binding domain
CDDcd000181.43E-24391452No hitNo description
PfamPF008471.0E-9391442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18392451IPR001471AP2/ERF domain
PROSITE profilePS5103219.045392450IPR001471AP2/ERF domain
SMARTSM003801.5E-33392456IPR001471AP2/ERF domain
PRINTSPR003673.8E-6432452IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MNNWLAFSLS PQEFPPPQPH QNHRLIPGDD VSADCFGLTS ESSTGGLSIP NLRTDGPFGI  60
LEAFNRSQPQ SQDWSMKSLD FKGNASELSM VVGSSSNQND MEVEKPKLED FLGGNSFPDN  120
NQSLQQGCNS MGGAYDNSPA YMFSNCSLQL PPAASAVSVS DAAGGGGSSN GNSIGLSMIK  180
TWLRSQPGPP QQDSRVVDMV VSGGAASSSV RNAAGNPSNV QSLSLSMSTG SQSSSPLPLM  240
AASASGGGGA ESSPSADNKQ KTNSSGTALD VQSGSMEVAT RKSIDTFGQR TSIYRGVTRH  300
RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEEKAARAYD LAALKYWGTT TTTNFPISNY  360
EKELEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  420
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSII ESSALPIGGA AKRLKEASDH  480
NEASIDGRRN DDRVTSQITE GISSYGSHHH GWSTIAFQQA APPPLAIPYP YGQQRVWCKQ  540
EQDTVTALQD LHHLQLGSAT QSLFQPSVFH NLAGLDSSSI EHSSGSSNSF IYSGAGGGGG  600
GTHHSLVGGG NGYSVPLGTV PADHSHPSQG LSGLGEGEAK QLGFENLLAS TDPYSSRNIY  660
YLSQQSPASV PCNNWIPNSG QAVPQRPSSN MSAVCLGAPI FSVWNDA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804192.20.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2H3YUT00.0A0A2H3YUT0_PHODC; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-121AP2 family protein