PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0063200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 343aa    MW: 37422.9 Da    PI: 4.7524
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0063200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.32e-2318125183
        trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     rWt+qe+l+Li++++  e+r r ++                         +p+W+ vs+++r++g++r+p+qC+++w+nl+ +ykkike+e +r+
  Spipo4G0063200  18 RWTRQEILVLIQGKKVAESRGRGRAqqqrhqqgssssstaaalvgagqPVEPKWATVSAYCRRHGVSRGPVQCRKRWSNLASDYKKIKEWEVRRR 112
                     8**************99998884333566777888889999999999788*****************************************9996 PP

        trihelix  73 ..sessstcpyfd 83 
                       s+ +s +++ +
  Spipo4G0063200 113 seSGGESFWVMRN 125
                     1234445555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-1118113No hitNo description
Gene3DG3DSA:1.10.10.602.3E-41897IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAEEGGGGGG GRPPRLPRWT RQEILVLIQG KKVAESRGRG RAQQQRHQQG SSSSSTAAAL  60
VGAGQPVEPK WATVSAYCRR HGVSRGPVQC RKRWSNLASD YKKIKEWEVR RRSESGGESF  120
WVMRNDLRRE RKLPGFFDKE VYDILDGTTE GGEPEEEQEE EEEEEELGDS SRREVPEAAA  180
SAPAPSAVAG DAEEPATAAA IFDSGRTAAE DALFSDFERE QEEEGEEDKD DDRPPPAPTS  240
SASPIPGAGG DKEAQEDVQK GSSSQEGRKR KRPPAGEAEE EGSLPGQLIQ ILERNSRALM  300
NHVEAQNVNH RLDREQRKEH GDSLVIVLGK VADALGRIAD KL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887986.11e-104trihelix transcription factor ASR3
TrEMBLA0A2R6REM81e-102A0A2R6REM8_ACTCH; Trihelix transcription factor
STRINGevm.model.supercontig_2461.11e-104(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-52Trihelix family protein