PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0060000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 479aa    MW: 51458.3 Da    PI: 7.262
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0060000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.6e-061646434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ ++e+ + ++C+ ++  lC +C ++ H
  Spipo4G0060000 16 VPCDFCGEETAVIYCRADSAKLCLSCDQHVH 46
                    67**************************999 PP
2zf-B_box25.13.6e-0859101442
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                     ++C++++++++ + C  ++  lC+dC    H +    H+++p+
  Spipo4G0060000  59 QICSNCGSQPVAFRCPADGLALCQDCDWDAHGSrgssHERTPV 101
                     79**************************99*447899998875 PP
3CCT52.41.9e-18427470145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R+ a+lRY+eKrktR+ + +irYesRKa+A++R+Rv+GrFvk+ae
  Spipo4G0060000 427 RDSAMLRYREKRKTRRLK-RIRYESRKARADTRKRVRGRFVKSAE 470
                     899*************96.9**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3241360IPR000315B-box-type zinc finger
SMARTSM003368.4E-121360IPR000315B-box-type zinc finger
CDDcd000213.60E-71646No hitNo description
PROSITE profilePS501199.96856101IPR000315B-box-type zinc finger
PfamPF006432.7E-559101IPR000315B-box-type zinc finger
CDDcd000216.98E-760101No hitNo description
SMARTSM003360.1761101IPR000315B-box-type zinc finger
PROSITE profilePS5101712.759427468IPR010402CCT domain
PfamPF062034.0E-13427468IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDGKIQQLPK RRADAVPCDF CGEETAVIYC RADSAKLCLS CDQHVHLANA LSRKHLRTQI  60
CSNCGSQPVA FRCPADGLAL CQDCDWDAHG SRGSSHERTP VEGFSGCPSA LELAAAWGFD  120
LAGKDSSDPH RFSGWLSGDS ISDMDSALLQ DLYVPCEDMA SFSRAQQTPL RRRRHALALL  180
RQLTEMTKRN AAAAPPCELG PETPVRNNRC RDAEDGADLR QMAYPSFLML PPGGCPGHGE  240
RDQLPEEDIL WDCDPLNHTS QIWDFHLGRS RDHHESLPAD VSNDAAFMIK SFGDLANGSS  300
FPTATAGAVG DVYESSCPSR PGDISSTDVS HRSGPPKDIL STGAQNLGAV QADGGWRAGS  360
NSASNGASRS SHNRATVVGP SGASSGEPRP SCSSKDVSLG DQLPPAAGSG ATLVAARIDG  420
ELLALNRDSA MLRYREKRKT RRLKRIRYES RKARADTRKR VRGRFVKSAE GVDVQSCG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435442EKRKTRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XLJ61e-180A0A1D1XLJ6_9ARAE; Zinc finger protein CONSTANS-LIKE 15
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.17e-74B-box type zinc finger protein with CCT domain