PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0017100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26304.5 Da PI: 8.2968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.8e-13 | 30 | 77 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +h+e+Er+RR+riN+ +++Lr+llP+ +++K + L+++v+ I++L Spipo4G0017100 30 CNSHSEAERKRRQRINHQLSRLRQLLPHT-----SRMDKGALLTEVVREIRDL 77 679*************************7.....6***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.14E-10 | 27 | 79 | No hit | No description |
PROSITE profile | PS50888 | 14.704 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 30 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-11 | 32 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-12 | 32 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.566 | 119 | 196 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRQTTGDGGG TLPPLTSAFP EAAVRVERAC NSHSEAERKR RQRINHQLSR LRQLLPHTSR 60 MDKGALLTEV VREIRDLRRR AADAVGVNEA CCGHSFPGEE DEVLLDCGGD GESGRRTATA 120 SFCCQDRSGL FRDVGEAIRS SKIRPARVEM ATVGGRTKAV LVVDPQSTAE GGGEQQLSAL 180 LAALRSVVEE VPGGGRATAA AKRMRSLQRD ERDRDEMTEL ASFPTGKRYA RLNNEADICF 240 NG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 41 | ERKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664394.1 | 7e-43 | PREDICTED: transcription factor bHLH30 isoform X1 | ||||
Refseq | XP_010664396.1 | 6e-43 | PREDICTED: transcription factor bHLH30 isoform X2 | ||||
Refseq | XP_010664397.1 | 6e-43 | PREDICTED: transcription factor bHLH30 isoform X2 | ||||
TrEMBL | A0A438G021 | 2e-41 | A0A438G021_VITVI; Transcription factor bHLH30 | ||||
TrEMBL | F6H125 | 2e-41 | F6H125_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g07410.t01 | 3e-42 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 6e-28 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0017100 |