PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0008600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 349aa MW: 36800.4 Da PI: 6.8289

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0008600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.4	1.5e-13	284	330	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r+rr++kNRe+A rsR+RK+a++ eLe ++ +L+++N+ L+k+ ee Spipo4G0008600 284 RRQRRMIKNRESAARSRARKQAYTMELEAEITKLKEQNELLQKKQEE 330 79************************************999988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.7E-12	279	346	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.955	282	331	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-13	284	330	No hit	No description
SuperFamily	SSF57959	2.74E-10	284	330	No hit	No description
Pfam	PF00170	2.0E-11	284	330	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	287	302	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.71E-22	289	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MMDFRGMGRA AGAPPEGSSG GGPGALARQP SIYALTFEEF QNTLGASKDF GSMNMDELLK 60 SIWTAEETQA MSSFPDGGGG GGGGGGCGGM VAGLQRQGSL TLPRTLSQKT VDEVWRDLFK 120 DGGAAAVPSG GADLQPPVQR QPTLGEITLE EFLLRAGLVR EAVEPERTAI NGGSLLYGDA 180 SSSLANNSPR LFLGFSPAAQ QNNGPAAATG NMMMNGGGAA LRPQMQVAAG RVTVASASPA 240 SQLPSEDLGR GNDDSSSLSP VPYRFGEGMR GRKPGGALER VVERRQRRMI KNRESAARSR 300 ARKQAYTMEL EAEITKLKEQ NELLQKKQEE ILVMQKNQSC TDITNIYI*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MMDFRGMGRA AGAPPEGSSG GGPGALARQP SIYALTFEEF QNTLGASKDF GSMNMDELLK  60
SIWTAEETQA MSSFPDGGGG GGGGGGCGGM VAGLQRQGSL TLPRTLSQKT VDEVWRDLFK  120
DGGAAAVPSG GADLQPPVQR QPTLGEITLE EFLLRAGLVR EAVEPERTAI NGGSLLYGDA  180
SSSLANNSPR LFLGFSPAAQ QNNGPAAATG NMMMNGGGAA LRPQMQVAAG RVTVASASPA  240
SQLPSEDLGR GNDDSSSLSP VPYRFGEGMR GRKPGGALER VVERRQRRMI KNRESAARSR  300
ARKQAYTMEL EAEITKLKEQ NELLQKKQEE ILVMQKNQSC TDITNIYI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934248.1	4e-96	bZIP transcription factor 23
Refseq	XP_025612611.1	4e-96	bZIP transcription factor 23 isoform X1
Refseq	XP_029144096.1	4e-96	bZIP transcription factor 23 isoform X1
Swissprot	Q6ZDF3	5e-79	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A1D1XUZ4	1e-107	A0A1D1XUZ4_9ARAE; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	GSMUA_Achr6P30550_001	3e-94	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	1e-41	ABRE binding factor 4

Link Out ? help Back to Top
Phytozome	Spipo4G0008600

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]