PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0003600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family BBR-BPC
Protein Properties Length: 275aa    MW: 29336.6 Da    PI: 10.5832
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0003600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind278.14.1e-8580274108301
       GAGA_bind 108 idslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqra.kkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngv 201
                     + +  +ls+pq + +++ l+  +  +  p++ +a   ke + +kkr+++ ++  +++ kk+kk ++   +   ++sa +r++  kks ++v+ng+
  Spipo4G0003600  80 MPNYTMLSDPQASGNPQTLQMLQPPDPAPVSGEAGARKEGPPPKKRSQGgRRSSAPRPKKPKKAPAPRDEAGGRPSAGPRARGAKKSSGIVINGI 174
                     45566778899999999999999999*********999999988877651677889999***9888888889999999***************** PP

       GAGA_bind 202 slDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                     +lD+s+lP+PvCsCtGa++qCY+WG GGWqSaCCttt+SvyPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DL  hWAkHGtnk
  Spipo4G0003600 175 NLDISGLPTPVCSCTGAPQQCYRWGVGGWQSACCTTTVSVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLSAHWAKHGTNK 269
                     *********************************************************************************************** PP

       GAGA_bind 297 fvtir 301
                     +vtir
  Spipo4G0003600 270 YVTIR 274
                     ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.9E-941274IPR010409GAGA-binding transcriptional activator
SMARTSM012266.1E-1281274IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDDGGLGIRN WGGYYDHQPA VKGLGLNLMS SMAAGEGDTK PLLPNGAFLH RECALPDHPV  60
SMQYNNWIRP RDGNRILHVM PNYTMLSDPQ ASGNPQTLQM LQPPDPAPVS GEAGARKEGP  120
PPKKRSQGGR RSSAPRPKKP KKAPAPRDEA GGRPSAGPRA RGAKKSSGIV INGINLDISG  180
LPTPVCSCTG APQQCYRWGV GGWQSACCTT TVSVYPLPMS TKRRGARIAG RKMSQGAFKK  240
VLEKLAGEGY NLANPIDLSA HWAKHGTNKY VTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936843.11e-107protein Barley B recombinant
RefseqXP_010936844.11e-107protein Barley B recombinant
SwissprotP0DH889e-78BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH899e-78BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A1D1XQG71e-126A0A1D1XQG7_9ARAE; Protein Barley B recombinant
STRINGXP_010271107.11e-106(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-72basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]