PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0001500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28248.4 Da PI: 9.4944 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 133 | 181 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT +E +lv++v ++G g+W+ I r + Rt ++k++w+++l Spipo4G0001500 133 AWTLWEVTKLVEGVSKYGAGRWSEIKRLAFpsyTQRTSVDLKDKWRNLL 181 7***************************988****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.893 | 126 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.26E-16 | 128 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-13 | 128 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-8 | 130 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.89E-19 | 132 | 182 | No hit | No description |
Pfam | PF00249 | 7.2E-9 | 133 | 181 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVEGDGTLVP ATDDDVMEVE HMLKDDKKYA PSIESMEKSQ DYASDAVLSS RKSGINSLEG 60 SSLSESSVGS SQKLNARLEN DAFIREDKSA AEASYWSSGQ DVTGASGDDS DDGGDIVLMP 120 KHNGGGRRTH HRAWTLWEVT KLVEGVSKYG AGRWSEIKRL AFPSYTQRTS VDLKDKWRNL 180 LRACFTQRPS DKTSTRRHNS APPIPTWVLA RVRELSQMQQ AHQRIGGFGS SKAARAMARY 240 KYVGPRGQWV SPKTH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455128.1 | 2e-43 | PREDICTED: uncharacterized protein LOC105776772 | ||||
Refseq | XP_016698008.1 | 2e-43 | PREDICTED: uncharacterized protein LOC107913858 | ||||
Refseq | XP_017649156.1 | 3e-43 | PREDICTED: uncharacterized protein LOC108489264 isoform X1 | ||||
Refseq | XP_017649157.1 | 3e-43 | PREDICTED: uncharacterized protein LOC108489264 isoform X1 | ||||
Refseq | XP_017649158.1 | 3e-43 | PREDICTED: uncharacterized protein LOC108489264 isoform X2 | ||||
TrEMBL | A0A1D1XQE9 | 3e-49 | A0A1D1XQE9_9ARAE; Telomere repeat-binding protein 6 | ||||
STRING | Gorai.011G058300.1 | 8e-43 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-34 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0001500 |