PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0111600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

TALE

Protein Properties

Length: 605aa MW: 64930.4 Da PI: 6.5177

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0111600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.6e-09	387	424	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Spipo3G0111600 387 FEHflHPYPSDADKHLLARQTGLSRSQVSNWFINARVR 424 564459******************************88 PP
2	BELL	78.1	1.3e-25	267	318	21	72
BELL 21 krYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rY++y e++q+ +ssF+ v+g g+a+pYt lA +a+SrhFrcLkdaia q+ Spipo3G0111600 267 ERYSHYTEKMQATVSSFDSVMGFGAAAPYTGLARRAMSRHFRCLKDAIAAQL 318 7************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.1E-28	193	316	IPR006563	POX domain
Pfam	PF07526	3.7E-21	267	315	IPR006563	POX domain
PROSITE profile	PS50071	12.681	365	428	IPR001356	Homeobox domain
SMART	SM00389	4.8E-10	368	432	IPR001356	Homeobox domain
CDD	cd00086	1.38E-13	368	429	No hit	No description
SuperFamily	SSF46689	1.58E-17	369	435	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-29	371	434	IPR009057	Homeodomain-like
Pfam	PF05920	2.0E-18	385	424	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MSQGFHQGIF SFSDGFGRSP ETVDSQALAA QQRRREGLRV QGFDQGEAHI SESASTPATM 60 LSDMFDFPSA GGNCAADLLV NQIPINYRLQ RPPAAAFSGN WYNPKPQGGD PQQNELAELN 120 ADSAAAMHLF LMNPSQSQQR APSPHHLHSF QSPSFVNESF RGGGVEGQGL SLSLSSSLQQ 180 LEMAQQVGYV GSIGMGNMMR HPKYAKATQE LLMEFCSTGM GLMKKGRKER RFGSFSTEPN 240 PSSSNAVGGS TAGTTALKEA LPLSPAERYS HYTEKMQATV SSFDSVMGFG AAAPYTGLAR 300 RAMSRHFRCL KDAIAAQLKH AGLLLGEKEG SGPSAITKGE TPRLRLVDQI LRQQRAFHQF 360 GAVEQESWRP QRGLPERSVN VLRAWLFEHF LHPYPSDADK HLLARQTGLS RSQVSNWFIN 420 ARVRLWKPMV EEMYQREANE AAETGDRERA TSESTTQPQP RRQRPEDMAG GTDLPHPPLA 480 SLNRGGGGGD GDGDVSAAVV GTEAIMSAGE DGVRIGILED YGAAMAAALE RTGTSGDVSL 540 TLGLRHAGST PASGGFSLAD FGGIDFSGPL LGPISWVSTR GGGNLETVDY SEVTISNETI 600 FSST*

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MSQGFHQGIF SFSDGFGRSP ETVDSQALAA QQRRREGLRV QGFDQGEAHI SESASTPATM  60
LSDMFDFPSA GGNCAADLLV NQIPINYRLQ RPPAAAFSGN WYNPKPQGGD PQQNELAELN  120
ADSAAAMHLF LMNPSQSQQR APSPHHLHSF QSPSFVNESF RGGGVEGQGL SLSLSSSLQQ  180
LEMAQQVGYV GSIGMGNMMR HPKYAKATQE LLMEFCSTGM GLMKKGRKER RFGSFSTEPN  240
PSSSNAVGGS TAGTTALKEA LPLSPAERYS HYTEKMQATV SSFDSVMGFG AAAPYTGLAR  300
RAMSRHFRCL KDAIAAQLKH AGLLLGEKEG SGPSAITKGE TPRLRLVDQI LRQQRAFHQF  360
GAVEQESWRP QRGLPERSVN VLRAWLFEHF LHPYPSDADK HLLARQTGLS RSQVSNWFIN  420
ARVRLWKPMV EEMYQREANE AAETGDRERA TSESTTQPQP RRQRPEDMAG GTDLPHPPLA  480
SLNRGGGGGD GDGDVSAAVV GTEAIMSAGE DGVRIGILED YGAAMAAALE RTGTSGDVSL  540
TLGLRHAGST PASGGFSLAD FGGIDFSGPL LGPISWVSTR GGGNLETVDY SEVTISNETI  600
FSST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-17	374	431	1	58	Homeobox protein Meis1
4xrs_B	2e-17	374	431	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395654.1	1e-151	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-105	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A1D1YB63	1e-176	A0A1D1YB63_9ARAE; BEL1-like homeodomain protein 4
STRING	GSMUA_Achr7P27440_001	1e-149	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4433	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-103	BEL1-like homeodomain 2

Link Out ? help Back to Top
Phytozome	Spipo3G0111600

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]