PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo3G0110100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | AP2 | ||||||||
Protein Properties | Length: 197aa MW: 22427 Da PI: 9.2303 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.9e-12 | 107 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Spipo3G0110100 107 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDAEEKAARAYDLAALKYWG 163 78*******************77776664446666.668888**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-9 | 107 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-15 | 107 | 172 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.80E-20 | 107 | 171 | No hit | No description |
SMART | SM00380 | 1.3E-21 | 108 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.556 | 108 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-13 | 108 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-6 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-6 | 153 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEIHHYGNDD SIRGHHSLEL LHLPFRSEEH QQSYLQPLQS IFQAPPTGEP PAAFSQPTSV 60 SPSLQIPPSA AIDGDSVNAV KKMGSFKNGQ KQPLHRKSID TFGQRTSQYR GVTRHRWTGR 120 YEAHLWDNSC KKEGQTRKGR QGGYDAEEKA ARAYDLAALK YWGPSTHINF PLEAYRDELE 180 EMKNMTRLEY VAHLRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890465.1 | 8e-71 | AP2-like ethylene-responsive transcription factor ANT, partial | ||||
Refseq | XP_026388614.1 | 2e-70 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Refseq | XP_026388616.1 | 2e-70 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Refseq | XP_026455713.1 | 2e-70 | AP2-like ethylene-responsive transcription factor CRL5 isoform X1 | ||||
Refseq | XP_026455714.1 | 2e-70 | AP2-like ethylene-responsive transcription factor CRL5 isoform X2 | ||||
Swissprot | Q84Z02 | 1e-64 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A1R3HKF7 | 1e-72 | A0A1R3HKF7_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_129.70 | 1e-72 | (Carica papaya) | ||||
STRING | POPTR_0002s11550.1 | 5e-70 | (Populus trichocarpa) | ||||
STRING | GLYMA0041S50.1 | 2e-70 | (Glycine max) | ||||
STRING | OB03G42600.1 | 3e-71 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 7e-62 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo3G0110100 |
Publications ? help Back to Top | |||
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