PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0039300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YB
Protein Properties Length: 183aa    MW: 19731.7 Da    PI: 5.7624
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0039300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB164.61.3e-5135130297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimkk+lP nakisk+aket+qecvsefisfvt+easdkc +ekrkt+ngdd++wal+tlGf+dy+ + + yl+kyr  ege
  Spipo3G0039300  35 KEQDRLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASDKCLKEKRKTVNGDDICWALGTLGFDDYASATRRYLHKYRGSEGE 129
                     89******************************************************************************************998 PP

           NF-YB  97 k 97 
                     +
  Spipo3G0039300 130 R 130
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-4932145IPR009072Histone-fold
SuperFamilySSF471139.01E-3737157IPR009072Histone-fold
PfamPF008083.0E-2740104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.5E-166886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.5E-1687105No hitNo description
PRINTSPR006156.5E-16106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGDSRGSSPE ADTRNNNGEG ASGGVAASES DDCIKEQDRL LPIANVGRIM KKILPPNAKI  60
SKEAKETMQE CVSEFISFVT GEASDKCLKE KRKTVNGDDI CWALGTLGFD DYASATRRYL  120
HKYRGSEGER AVAYKGGPAD GGDQELHLFG GDQVRNNQAS TSNSFKFNVV DWNSGHSTTK  180
PY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4334124191Transcription factor HapC (Eurofung)
4g92_B6e-4334124191Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880381e-75AB288038.1 Oryza sativa Japonica Group OsHAP3D gene for HAP3 subunit of HAP complex, complete cds.
GenBankAP0032461e-75AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBankAP0032661e-75AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBankAP0149571e-75AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-75CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8365731e-75CT836573.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259679.13e-66PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822485e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U8A0J56e-65A0A1U8A0J5_NELNU; nuclear transcription factor Y subunit B-5-like
STRINGXP_010259679.11e-65(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]