PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo3G0030500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24263.1 Da PI: 6.7232 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 85 | 133 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg++ t+e+Aa+a++ a+++++g Spipo3G0030500 85 YRGIRRRR-WGKWAAEIRDPRK---GVRVWLGTYNTPEDAARAYDVAAREIRG 133 9****777.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-32 | 84 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-37 | 84 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-23 | 84 | 142 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.711 | 84 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.70E-29 | 85 | 142 | No hit | No description |
Pfam | PF00847 | 1.7E-12 | 85 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MCGGAIISDF IRFKEDARRG GRKVVPLDLT FDFDGISDYS ESFSSSAVGD GADGPRGSTQ 60 NPKEVSDPEA GNGKEAGGKP RKTMYRGIRR RRWGKWAAEI RDPRKGVRVW LGTYNTPEDA 120 ARAYDVAARE IRGKKAKLNF PDPKPGVSAE RRSAPCPPSP DFSSSSSAWP TPRPAPSEAE 180 LKKQISNLEL LLGLQQEESD AWMGGGCGPY DLEIFDDVEL II* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 85 | 142 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2H3XWR0 | 4e-45 | A0A2H3XWR0_PHODC; ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | Q56E95 | 6e-45 | Q56E95_GOSHI; Putative ethylene responsive element binding protein 2 | ||||
STRING | XP_008789907.1 | 7e-46 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-37 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo3G0030500 |