PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0028100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 283aa    MW: 30370.3 Da    PI: 4.923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0028100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH468.9e-15225249226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ + ++G+C+yGd+C+FaHg
  Spipo3G0028100 225 KTELCNKWEEMGWCPYGDQCQFAHG 249
                     8***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-17220256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-11221255IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817223251IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-12225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-7257281IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.282261282IPR000571Zinc finger, CCCH-type
SMARTSM0035614261282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRGRDPCFME GGIALPFSST SASEIPASCC SEEVAGAGKS SSTAAGVSAD LIDVQRRQIL  60
RELQFLVDRY NDSFRSLSLV LADLELLRQE NLALRAENLE FSLFLEEQKN NVLGATSESC  120
GVLDPRSAVP QIGMDENLPP GEGIIPRNEK SGVLSVVPKS ISIRSKGFLA VDHASGRSGG  180
TAEDVSASGD IITRHSQPLP LASVQVGEAD GMGISVEVFN QGMAKTELCN KWEEMGWCPY  240
GDQCQFAHGV DELRPVIRHP RYKTQLCRMI SGPGGCPYGH RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-20225281561Butyrate response factor 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-40C3H family protein