PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo32G0011000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 497aa    MW: 52846.1 Da    PI: 7.1172
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo32G0011000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.4e-37902592134
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................. 65 
                       g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+++                              
  Spipo32G0011000  90 SGGKDRHSKVMTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAISELPSLdgvfsdqplsgqrqpdpedeekparaieed 183
                      579********************************************************************99999988887765555555443 PP

              TCP  66 .....ssssaseceaesssssas............nsssg......kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                           s              + +                +       + +++++s+ s++s+ s+l+l++ e r kar+rar rt+  + +++
  Spipo32G0011000 184 ddadvS--------------QIQyvshqlrrpqpeD---QqqqqqhFSLTKSTCSSTSETSKGSVLSLSRsEIRVKARERARGRTATAKDKDK 259
                      332221..............1112222222222220...02233336677777999999999999***999999**********998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-3991255IPR005333Transcription factor, TCP
PROSITE profilePS5136932.24392150IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.537237257IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEMDDIHSSK RSRMGNGNAG GRDHSSAAAA AAAAVAGASK VAQEQRKDED EEDGDGKSGL  60
GPAAAAAVRG LRPWDQHSAA SRIYRVARSS GGKDRHSKVM TAKGLRDRRV RLSVSTAIQF  120
YDLQDRLGYD QPSKAIEWLI KAAAAAISEL PSLDGVFSDQ PLSGQRQPDP EDEEKPARAI  180
EEDDDADVSQ IQYVSHQLRR PQPEDQQQQQ QHFSLTKSTC SSTSETSKGS VLSLSRSEIR  240
VKARERARGR TATAKDKDKD TEDDAHMTSA GHHPGLNPSP TPQSSFTELL TGGGGHQNQG  300
HYHGPVTVAH ANPASNFFHK QLRHQPSAAT TTDYFGQVGL LGAGSRPLQP MVFSTQTSFG  360
NSPHMGMMPL NVAAAAAAAS AAGDHPEIQQ HFMQEHLVPY AVTAAGGDFI NFSISSGISG  420
LNRGTLQSNS PSPVLHQHLQ RFSSPADGSN LPIFLGAAAQ SSSASGEAQL PAGFDSRLQL  480
CYDGYRNSDL KGKGKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2397151155Putative transcription factor PCF6
5zkt_B1e-2397151155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037043e-47AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061633e-47AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149633e-47AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-47CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784856.11e-148transcription factor PCF6-like
TrEMBLA0A2H3XJS11e-146A0A2H3XJS1_PHODC; transcription factor PCF6-like
STRINGXP_008784856.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-35TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2