PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo32G0009800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 843aa MW: 90593.4 Da PI: 6.7487

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo32G0009800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	32	90	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Spipo32G0009800 32 KYVRYTAEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 90 56789****************************************************97 PP
2	START	160.7	1.1e-50	179	386	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+a+e+++ka+ ++ Wv + +++g+++l +f+ s+++sg a+ra+ +v ++a v+e+++d++ W +++++ +++ vi g g ++l Spipo32G0009800 179 IAEETAAEFLSKATGTAVDWVPMLGMKPGPDSLGIFAVSHNCSGVAARACSLVSLEPA-KVAEIVKDRPSWYRDCRRLDVHTVIPVGngGSIEL 271 6899****************************************************.7777777777*********999888899999 PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 ++++ ++++++ Rdf+++Ry+ l++g++vi+++S++ ++ p +++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+ Spipo32G0009800 272 LHMQTYSPTTIASaRDFWTLRYTTALEDGGLVICERSLNATTGGPAgpvAPNFVRAEMLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 365 99999999999999**************************99999***************************************** PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s + ++k++ a+l++ + Spipo32G0009800 366 LYESPKILAQKMTIAALRHIR 386 **************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.629	27	91	IPR001356	Homeobox domain
SMART	SM00389	1.6E-15	29	95	IPR001356	Homeobox domain
CDD	cd00086	2.15E-16	32	92	No hit	No description
SuperFamily	SSF46689	5.13E-16	32	93	IPR009057	Homeodomain-like
Pfam	PF00046	5.1E-16	33	90	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-18	34	87	IPR009057	Homeodomain-like
CDD	cd14686	7.58E-6	84	123	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.7E-4	88	137	No hit	No description
PROSITE profile	PS50848	23.942	169	369	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.4E-21	178	369	IPR023393	START-like domain
SMART	SM00234	2.2E-42	178	388	IPR002913	START domain
SuperFamily	SSF55961	8.93E-35	179	388	No hit	No description
Pfam	PF01852	2.4E-48	179	386	IPR002913	START domain
SuperFamily	SSF55961	7.8E-6	426	509	No hit	No description
SuperFamily	SSF55961	7.8E-6	540	613	No hit	No description
Pfam	PF08670	4.1E-24	717	816	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MAMVVHQPHQ LPQGKEGGGG GAAKGAQMDS GKYVRYTAEQ VEALERVYAE CPKPSSMRRQ 60 QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKESTRLQTV NRKLTAMNKL LMEENDRLQK 120 QVSQLTYENG YMRQQLHTTS GVTADTSCES VVTSGQHQRN PTPQHPQRDA SNPAGLLAIA 180 EETAAEFLSK ATGTAVDWVP MLGMKPGPDS LGIFAVSHNC SGVAARACSL VSLEPAKVAE 240 IVKDRPSWYR DCRRLDVHTV IPVGNGGSIE LLHMQTYSPT TIASARDFWT LRYTTALEDG 300 GLVICERSLN ATTGGPAGPV APNFVRAEML PSGYLIRPCE GGGSMIHIVD HVDLDAWSVP 360 EVLRPLYESP KILAQKMTIA ALRHIRQISL EASGEVVHGG GRQPAVLRTF SQRLSRGFND 420 AVSGFADDGW SLLGSEGSED VVVAVNCSPS KLLGPQFNPS TGFPAFGGGI LCAKASMLLH 480 NVPPAVLVRF LREHRSEWAD CGVDAATAAM KAGPFAVSAP RAAGGYQGGQ VILPLAHTVE 540 HEEFLEVVRL ENQGLDADNV IAPRDIYLLQ LCSGVDEGST GSCAQLVFAP IDESFADDAP 600 LLPSGFRVIP LDSKTDGQAG ARTLDLASTL EARPGSGGGA ARAAAADAGG ACRSVLTIAF 660 QFTFETHLRD HVAAMARQYV RSVVASVQRV AMAIAPSQLG PRLGLKPPAA GSPEALTLAQ 720 WICRSYRLST GAELLKPGPQ AGGDSLLKLL WHHPDAIICC SLKISASAPC CTFANQAGLD 780 MLETTLLALQ DIPLDKILDE PAQKALYSEF PKIMQQAVAW KVVNEDDANQ YLAFLFANWS 840 FV*

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MAMVVHQPHQ LPQGKEGGGG GAAKGAQMDS GKYVRYTAEQ VEALERVYAE CPKPSSMRRQ  60
QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKESTRLQTV NRKLTAMNKL LMEENDRLQK  120
QVSQLTYENG YMRQQLHTTS GVTADTSCES VVTSGQHQRN PTPQHPQRDA SNPAGLLAIA  180
EETAAEFLSK ATGTAVDWVP MLGMKPGPDS LGIFAVSHNC SGVAARACSL VSLEPAKVAE  240
IVKDRPSWYR DCRRLDVHTV IPVGNGGSIE LLHMQTYSPT TIASARDFWT LRYTTALEDG  300
GLVICERSLN ATTGGPAGPV APNFVRAEML PSGYLIRPCE GGGSMIHIVD HVDLDAWSVP  360
EVLRPLYESP KILAQKMTIA ALRHIRQISL EASGEVVHGG GRQPAVLRTF SQRLSRGFND  420
AVSGFADDGW SLLGSEGSED VVVAVNCSPS KLLGPQFNPS TGFPAFGGGI LCAKASMLLH  480
NVPPAVLVRF LREHRSEWAD CGVDAATAAM KAGPFAVSAP RAAGGYQGGQ VILPLAHTVE  540
HEEFLEVVRL ENQGLDADNV IAPRDIYLLQ LCSGVDEGST GSCAQLVFAP IDESFADDAP  600
LLPSGFRVIP LDSKTDGQAG ARTLDLASTL EARPGSGGGA ARAAAADAGG ACRSVLTIAF  660
QFTFETHLRD HVAAMARQYV RSVVASVQRV AMAIAPSQLG PRLGLKPPAA GSPEALTLAQ  720
WICRSYRLST GAELLKPGPQ AGGDSLLKLL WHHPDAIICC SLKISASAPC CTFANQAGLD  780
MLETTLLALQ DIPLDKILDE PAQKALYSEF PKIMQQAVAW KVVNEDDANQ YLAFLFANWS  840
FV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923678.1	0.0	homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	0.0	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A1D1ZIN7	0.0	A0A1D1ZIN7_9ARAE; Homeobox-leucine zipper protein HOX32
STRING	XP_008794452.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Spipo32G0009800

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]