PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo32G0006400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 264aa    MW: 29348.6 Da    PI: 5.0654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo32G0006400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.4e-17210256455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn +ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Spipo32G0006400 210 VHNLAERRRRDRINEKMKALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 256
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-19203261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.393206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.98E-15209254No hitNo description
Gene3DG3DSA:4.10.280.101.2E-19210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-15210256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATALPMARL LPNPIRGGFP GGLEHDLVEL SWQNGGIVMN SQAQRRAAAS CSEAKNLQKP  60
EVHPKHRDPF EGSIREEDER ETATWLHYPI DDPLDGDFCP EFYGLPAAEQ EGLAKHDAAA  120
PAPAEEEEGA VFGDYVFSTP SAPVLKEEEE SSSSKREEAE TNWRKGQKRK GVDAGESECL  180
TEEAADCESG QASRRRRRSA SSRRSRAAEV HNLAERRRRD RINEKMKALQ ELIPHCNKSD  240
KASMLDEAIE YLKSLQLQLQ LIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095267.11e-45transcription factor PIF4-like isoform X1
RefseqXP_020095268.11e-45transcription factor PIF4-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-27phytochrome interacting factor 3-like 5