PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo31G0005500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 377aa    MW: 40997.6 Da    PI: 10.104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo31G0005500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18138237299
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +k+lt+sd++  + +++pk  a+++       + k   s+tl + d++g++ ++k+iyr++++r++ltk+W  Fvk+++L +gD+vvF   +++
  Spipo31G0005500 138 EKELTRSDTNGGA-FSVPKLWADRIfppldysEAK--PSQTLFVCDPEGNKISFKHIYRGTPRRHLLTKCWPTFVKSKKLIAGDSVVFV--KDR 226
                      5778777777766.***************975433..3569************************************************..667 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++ +v+++r+
  Spipo31G0005500 227 SGQIFVRLRRA 237
                      88899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-28131247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-23133239IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-15136236No hitNo description
PROSITE profilePS508639.234136238IPR003340B3 DNA binding domain
SMARTSM010192.3E-9137238IPR003340B3 DNA binding domain
PfamPF023623.2E-16139237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVSACVDLGG KGNLPVVRRG TLPGSNGRSR FSSGSRHLGG LLREIRVIPA VGTPVYYFPQ  60
GHEEQAFCPV EWEKRADDLP MIPCKISDVP YPANPSRDEV FAKIRLKPDA PGQAPLPAAT  120
GAPPKSAGRD EEKVISVEKE LTRSDTNGGA FSVPKLWADR IFPPLDYSEA KPSQTLFVCD  180
PEGNKISFKH IYRGTPRRHL LTKCWPTFVK SKKLIAGDSV VFVKDRSGQI FVRLRRAERS  240
GGHAPSAPPA AGESPTGGPA MDPSPSRKRV RPDDGIQGVR QGLPSPGPHG FRPARGRLSG  300
APDKNISPSP PKRESLGGSS ANWSSDNQCT VQDFFLPLPG SVVRGDVKEL SPSEERLIRE  360
YGYFDFFLID EMGRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-384525763279Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245064.13e-52PREDICTED: auxin response factor 17
TrEMBLA0A1U7ZB886e-51A0A1U7ZB88_NELNU; Auxin response factor
STRINGXP_010245064.11e-51(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.16e-46auxin response factor 10