PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo30G0005400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HB-other

Protein Properties

Length: 291aa MW: 32150.6 Da PI: 6.5205

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo30G0005400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	128	183	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+++ ++t+eq+ +Lee+F+++ +ps ++r L+++lgLt qVk+WFqNrR + k Spipo30G0005400 128 RSTKKRHTPEQIIRLEEVFRECCHPSDRQRLSLSQELGLTPGQVKFWFQNRRNQLK 183 5678899*********************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.01E-18	119	185	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-18	124	191	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.422	125	185	IPR001356	Homeobox domain
SMART	SM00389	9.6E-18	127	189	IPR001356	Homeobox domain
CDD	cd00086	8.50E-17	128	186	No hit	No description
Pfam	PF00046	3.7E-16	129	183	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	160	183	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MKGFQLAPAM ALGGMAAVSQ IGKITQVQKM SFSFPIDGDA ASEEAIGCPL DFTADFLIMP 60 SISISLSDTI APLPLETRNF VVGNGEEREN LNGKDDGSSS DENQAALMTK ALLPPSEPRT 120 TEESNGPRST KKRHTPEQII RLEEVFRECC HPSDRQRLSL SQELGLTPGQ VKFWFQNRRN 180 QLKNRHERES NIHLRAVNER LKDVNYGLKA SMCNATCGTC GRPTVVRLPS EEEMRLMREN 240 AWLKGEVDKI SFFLRSRGIL LAQPMLPTVP GPPQNTDTGF YPPYPGGADF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-35	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Spipo30G0005400