PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0125000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26964.7 Da    PI: 8.7296
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0125000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.28.1e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstg+ly++s+
  Spipo2G0125000 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGRLYDFSN 59
                    8***********************************************95 PP
2K-box79.77.2e-2781170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++++a+ +q+e+  L++e+  Lq ++R+l Ge+L+ L++k+Lq+Le+qLe sl++iR+kK++ll+++i+el +k + ++ en++L k+l
  Spipo2G0125000  81 NATSEAKFWQKEAGSLRQELLALQDSHRQLRGEELSGLNIKDLQNLENQLEMSLRTIRTKKEQLLTDEIQELNRKGNLIHLENTELYKQL 170
                     567899********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.16161IPR002100Transcription factor, MADS-box
CDDcd002651.84E-43276No hitNo description
SuperFamilySSF554551.83E-30290IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.40486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGRLYDFSNT  60
SMRAVMERYN KAKEDHCLDL NATSEAKFWQ KEAGSLRQEL LALQDSHRQL RGEELSGLNI  120
KDLQNLENQL EMSLRTIRTK KEQLLTDEIQ ELNRKGNLIH LENTELYKQL NLIRQENMEL  180
CKKVYASRES KGAEGCPSFQ NSFSLTTGPH VPVDLELSQP QHQTCDMRQE PPRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19176176MEF2C
5f28_B2e-19176176MEF2C
5f28_C2e-19176176MEF2C
5f28_D2e-19176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281673e-42KJ728167.1 Zea mays clone pUT6437 MADS transcription factor (MADS39) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026663467.11e-117MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1D1Y1X51e-119A0A1D1Y1X5_9ARAE; MADS-box transcription factor 27
STRINGXP_008800745.11e-117(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-93AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]