PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0107000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 309aa    MW: 33168.6 Da    PI: 8.6049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0107000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12130177355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  A++Y+k+Lq
  Spipo2G0107000 130 QDHIIAERKRREKLSQKFIALSAIVPGL-----KKTDKASVLGDAIKYVKQLQ 177
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16130197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-13132181No hitNo description
SMARTSM003531.6E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.247238308IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSLEELTSQ HIAAALVDDF QSSFSSGSYT SYPTFTSYGR TEGKTFSCSS VETSGADQVS  60
TAAPDVSSPT ILSFGNRPVV GGFAASPPPV KPKEEAGFTI TRGSKRTYET MVTQGAKKVN  120
GGTRPPSQAQ DHIIAERKRR EKLSQKFIAL SAIVPGLKKT DKASVLGDAI KYVKQLQEKV  180
AVLEDQSTRR TVESAVLVRR SQLSLDDGIS SSGENFDGPS AGTPLPEIEA KLCEKSVLVR  240
VHCEKRKGVL ARLLDEIEKL HLSVVNTSSV PFANSALDIT VTAQVEDGFS ITVKDLMKHL  300
NLACRQFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13131186863Transcription factor MYC2
5gnj_B6e-13131186863Transcription factor MYC2
5gnj_E6e-13131186863Transcription factor MYC2
5gnj_F6e-13131186863Transcription factor MYC2
5gnj_G6e-13131186863Transcription factor MYC2
5gnj_I6e-13131186863Transcription factor MYC2
5gnj_M6e-13131186863Transcription factor MYC2
5gnj_N6e-13131186863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
2136141RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790399.11e-124transcription factor bHLH18-like
RefseqXP_008790400.11e-124transcription factor bHLH18-like
RefseqXP_008790401.11e-124transcription factor bHLH18-like
RefseqXP_008790402.11e-124transcription factor bHLH18-like
SwissprotQ9T0724e-58BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3XY291e-123A0A2H3XY29_PHODC; transcription factor bHLH18-like
STRINGXP_008790398.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-60bHLH family protein