PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0094100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-PHD
Protein Properties Length: 897aa    MW: 100024 Da    PI: 4.8648
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0094100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.21.4e-13757810356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +R ++ +   ++L+e F++n+yp+++++e LA++lg+t r+V  WF N R   +
  Spipo2G0094100 757 TRSKYGAAVYQRLQESFRENQYPTRDAKESLARELGMTARKVGKWFENARHSSR 810
                     68888888999***************************************8765 PP
2PHD36.41.2e-12314369151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++    +e++++lCdg C++ fH+kCl+++l ++++p +   wlC+ C++k
  Spipo2G0094100 314 FCAKCKStdISAENDIILCDGiCDRGFHQKCLNPHLLTDDIPPDdeGWLCPACDCK 369
                     699****66557********88***************999999899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-13304372IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.6E-12308369IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.914312369IPR019787Zinc finger, PHD-finger
PfamPF006284.8E-10314369IPR019787Zinc finger, PHD-finger
SMARTSM002498.9E-10314367IPR001965Zinc finger, PHD-type
CDDcd155044.95E-27314366No hitNo description
PROSITE patternPS013590315366IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.607.5E-13740806IPR009057Homeodomain-like
PROSITE profilePS5007114.268752812IPR001356Homeobox domain
SMARTSM003896.3E-10754816IPR001356Homeobox domain
SuperFamilySSF466893.76E-11756815IPR009057Homeodomain-like
PfamPF000465.8E-11757810IPR001356Homeobox domain
CDDcd000861.53E-10767810No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MRSLEPERRR GDVVSQHEKR LAQEEEEEEE EEEEAAGVAS SSRRLLSFSL TATATNGEPT  60
QGNGLFLLLA AHLRNAVLPC PLCTGRRQLN LQVNDLSSRC AEEPEYDFES QNVDSQSTAH  120
KSVHTDSETL QGPDETRSPP EALEKQKVLT KSTRRLSRYG KKAAIRRGRT YLLRSSFSSS  180
RVLRSMSKSA TRSLPPSNNS PVDLVKDKRK RRRRRRQSAT NDEFSRTRKS VRYLLHRMSY  240
EQNLIDAYVG EGWKGQSSEK IKPEMELQRA KSEIVRCKLK IRSLFQQLEF SISEGKLDDS  300
LFDSEGEICS EDIFCAKCKS TDISAENDII LCDGICDRGF HQKCLNPHLL TDDIPPDDEG  360
WLCPACDCKV DCIDLINEKQ GTSLSIKDEW EKVFPEVARF GSEDGQLDNL GLPSDDSEDH  420
DYDPDDFGAE NFEADEEVKE GSSSDESDFT STSEDFGALN HDIHNQKFGL PSDDSEDHDY  480
DPDRREHNEN SAKDSSRSDE SDFTSDTDDL NVLGNEISDN NEASASPISK YPRIGEGSDT  540
DPLPVNSALC SFEPALGQEN VAPLSSKRQR EHLDYKKLYE MRVEDMASNA QSVGLVGQTQ  600
SISDPDQISQ WVFPWSLKTA FNQLFGSARV ILARLFCISA KNIHETYGND LSDSSDDEEW  660
ADTSTPANLT SDTNDDDTEG LIKSGGEFAE DESSTKRKKK LDVERIVMPP ACSDISSSQK  720
AKARRKVQTE PIKPSATRQK KDSEQPDCNG KRPPLSTRSK YGAAVYQRLQ ESFRENQYPT  780
RDAKESLARE LGMTARKVGK WFENARHSSR VSTRRVGPAR GSGNRAGSRD SKEAVASESS  840
GKDSSLGTLA ESHHVDPCEA GDNGGGGGRE EKLAGEPPED QQVSLKRELR KRRTNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207215KRKRRRRRR
2208212RKRRR
3208215RKRRRRRR
4209214KRRRRR
5209215KRRRRRR
6210215RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZG830.0A0A1D1ZG83_9ARAE; Homeobox protein HOX1A
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-77Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain