PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0088500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 620aa MW: 68145.5 Da PI: 4.1617

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0088500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.5e-08	361	408	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ ++v + ++ W+ +r ++ ++ k+++s+++++ Spipo2G0088500 361 KWTEEEEHIFHEVVSENPSSlgknFWDHLPRFLP-SKSSKDLVSYYFNV 408 8*************98888888******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0044	358	411	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.58E-5	359	409	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.272	360	409	IPR017877	Myb-like domain
CDD	cd00167	5.80E-7	361	409	No hit	No description
Pfam	PF00249	2.1E-6	361	408	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MYLTNELISD SSDMVSNCKN TFSDDVSCQV NFSSQLAPSV ERPPCQAIPE KPNISDEDIE 60 AFSQSHGDDR PAVDSISELS VAVEEGLVSR MTQCHYENDP GSSCSLKCMS SNTHEDVIEL 120 EPMKRSRTGD DLHQNPFKRA RQLEDSDRDV SFELPIIKAA HVEPLISVAA LNKSTNDGDT 180 FREEPSVDAS ASTSSLSLVS CNTSEEEYRP DLPLQMISSP HFVEKRDQPS VYISILDYFP 240 RKPVALGPNH QADIPAWRPR PVKGLPNGSD PGVSFHHLAD EDGSEELMGT CIIPMPDDTA 300 ASFEDSKVSV GASGCSCPDK GSISCVSRHI MEEREILEEN LGSGKFIALG FPEMGEYVAS 360 KWTEEEEHIF HEVVSENPSS LGKNFWDHLP RFLPSKSSKD LVSYYFNVFI LRKRAEQNRS 420 DPLHIDSDND EWQDGDDGSE FAAEDYECDS AMKMPDEHGV YDDDSHEEDD FHEDNDDGDA 480 CDDLIAAEDR RQELDDFLVK GHAPPMSSYS PLMHRDGIAE DHSVQDDSCT SFEGHHAGTP 540 AAIAADGLPA VGFSRVGRGA LSGTVDHGYL VSPDAKPWDL SYFPGQEKSV DFLPTCHVIE 600 EVFGKGSWAS ESSDGQGIS*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MYLTNELISD SSDMVSNCKN TFSDDVSCQV NFSSQLAPSV ERPPCQAIPE KPNISDEDIE  60
AFSQSHGDDR PAVDSISELS VAVEEGLVSR MTQCHYENDP GSSCSLKCMS SNTHEDVIEL  120
EPMKRSRTGD DLHQNPFKRA RQLEDSDRDV SFELPIIKAA HVEPLISVAA LNKSTNDGDT  180
FREEPSVDAS ASTSSLSLVS CNTSEEEYRP DLPLQMISSP HFVEKRDQPS VYISILDYFP  240
RKPVALGPNH QADIPAWRPR PVKGLPNGSD PGVSFHHLAD EDGSEELMGT CIIPMPDDTA  300
ASFEDSKVSV GASGCSCPDK GSISCVSRHI MEEREILEEN LGSGKFIALG FPEMGEYVAS  360
KWTEEEEHIF HEVVSENPSS LGKNFWDHLP RFLPSKSSKD LVSYYFNVFI LRKRAEQNRS  420
DPLHIDSDND EWQDGDDGSE FAAEDYECDS AMKMPDEHGV YDDDSHEEDD FHEDNDDGDA  480
CDDLIAAEDR RQELDDFLVK GHAPPMSSYS PLMHRDGIAE DHSVQDDSCT SFEGHHAGTP  540
AAIAADGLPA VGFSRVGRGA LSGTVDHGYL VSPDAKPWDL SYFPGQEKSV DFLPTCHVIE  600
EVFGKGSWAS ESSDGQGIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1ZCN7	0.0	A0A1D1ZCN7_9ARAE; AT-rich interactive domain-containing protein 2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11684	4	6

Link Out ? help Back to Top
Phytozome	Spipo2G0088500