PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0078700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 436aa    MW: 48460.5 Da    PI: 6.8842
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0078700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-1291132345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
   Spipo2G0078700  91 EWNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKGQCIDHYT 132
                      7*****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002912.0E-94589IPR000433Zinc finger, ZZ-type
PfamPF005693.8E-94781IPR000433Zinc finger, ZZ-type
SuperFamilySSF578504.59E-104981No hitNo description
PROSITE profilePS5013510.164980IPR000433Zinc finger, ZZ-type
CDDcd023351.50E-154980No hitNo description
PROSITE patternPS0135705178IPR000433Zinc finger, ZZ-type
SuperFamilySSF466894.93E-1384138IPR009057Homeodomain-like
PROSITE profilePS5129322.24887139IPR017884SANT domain
SMARTSM007171.3E-1188137IPR001005SANT/Myb domain
PfamPF002493.6E-1291134IPR001005SANT/Myb domain
CDDcd001671.11E-1191134No hitNo description
Gene3DG3DSA:1.10.10.603.2E-891134IPR009057Homeodomain-like
SuperFamilySSF466897.53E-12366421IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGRSRGVANN PGDEDLSHRS KRRKAASSAE TLENVATGSG AGDGKKALYH CNYCNKDISG  60
KIRIKCTKCP DFDLCVECFT DSLSFPLFSP EWNADEEILL LEGIEMYGLG NWAEVAEHVG  120
TKSKGQCIDH YTAYYLNSPC YPLPNMAHVV GKNRKELLAM AKGHGDGKKD GDSVDVKAGV  180
PSNSTGASSA GASKKASRMM HAKEGSDRVK VEGLASSEEG HVDRSVGVKK PKYSGEELPI  240
TELSGYNPKR QEFDPEYDAD AEQSLAEMEF KETDTETDRE LKLRILHIYY SRLDERKRRK  300
DFILERNLLY PSAFEKELSS EDREIYERYK ECKAAGCRTR AEADAYLAEK AKRELESSAR  360
KARETGQEQQ LCCESRLLPS HFLKMQEVLA AEMMKGNVQQ KGDAHGLFKV DPGKVDRVYS  420
VVARKLGKRE EPAVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C5e-28491465119Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780988.10.0transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL61e-158TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1D1XW140.0A0A1D1XW14_9ARAE; Transcriptional adapter
STRINGXP_008780988.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]