PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0069500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 283aa    MW: 31160.9 Da    PI: 6.5131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0069500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-202978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Spipo2G0069500 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                    69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-292888No hitNo description
Gene3DG3DSA:3.30.730.101.1E-302987IPR001471AP2/ERF domain
PfamPF008472.5E-132978IPR001471AP2/ERF domain
SMARTSM003802.7E-372992IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.552986IPR001471AP2/ERF domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MENGRRGPLR PWKKGPSRGK GGPLNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLQS SLAAPGMGRP HRFRWFPSGG FSSIFPKCGF  120
LNLGAQHNVH AIHRRLQELQ NAKPSSSGEP PLAGVGTRLQ NSPATAEKVD LQQENHGVSV  180
PEKPQIDLKE FLQQLGVLRA DETREEAAEE GVVVVNSCAQ TPPPPPPPAF ESSGAGADVS  240
CFSHSEFSWD ELVDMRDLED DGGLHTHDMH EEVGFPISLW DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-163086663ATERF1
3gcc_A1e-163086663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940962.11e-106dehydration-responsive element-binding protein 2E-like
TrEMBLA0A2H3Z8041e-101A0A2H3Z804_PHODC; dehydration-responsive element-binding protein 2F
STRINGXP_008809802.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-61ERF family protein