PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0051100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 1295aa MW: 144215 Da PI: 5.7994

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0051100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33	1.7e-10	1239	1288	25	74
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 ++p++f nvh+ F asnv+k+lk lp+ +r+da++s+++e++++++d v Spipo2G0051100 1239 KKPARFVNVHRAFKASNVTKILKVLPPANRRDAVTSICFEGDVQLQDSVC 1288 5799****************************************999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48371	1.78E-11	95	114	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	1.78E-11	144	203	IPR016024	Armadillo-type fold
Pfam	PF04931	6.3E-34	155	319	IPR007015	DNA polymerase V
SuperFamily	SSF48371	1.78E-11	254	280	IPR016024	Armadillo-type fold
Pfam	PF04931	2.8E-120	318	955	IPR007015	DNA polymerase V
SuperFamily	SSF48371	1.78E-11	374	491	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	1.78E-11	724	833	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	1.78E-11	1037	1210	IPR016024	Armadillo-type fold
Pfam	PF03195	7.1E-10	1239	1292	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity

Sequence ? help Back to Top
Protein Sequence Length: 1295 aa Download sequence Send to blast
MAGKKRTSRS AELSESESGD GSDGDGAPAT LQKSVKPMER RKKRKELDKA RHSAAAEGEK 60 PPKPKAESSA VRGPGGQAPP SAHGGGLPVH LFMDLTSLES SVREAAAEGL ATELRKSQEE 120 FERFGGEHRD SGRGAVPLEA EKNDGLDNCA PPVRYAVRRL IRGLASSREC ARQGFALGLA 180 IVVGSVPAIR VDSIMKLVVQ FLEVSSSRKG QEVRDSLIGR LFAYGALARS GRVAAEWASQ 240 KSSTSIKEIL AQVTLLAGRK RYLREPAVSV ILDLVEGLPV EVLLDQVIES DGIREWFEKA 300 PEVGDPDALF LALRLQEKES TFCLPRVHSI WYVLIDILLP ADVISHDEDS SSHPNSSKKQ 360 KRARKANSAE EIAKNFRCFH EVVIEGCLLL SSHDRKHLVF DILLLLLPRL PKTFIEIVLS 420 HKLVHCLMDI LSTKSSWLYS AAQKFMGELV SWVGNDDDRR VAVILSLAKH SNCRFDCITQ 480 TNTVRELISR FYTCSGRVLL AQNLMSLFVD ESGLADEPSD ASQTTDENSE RDSPEGKDPG 540 GILGNTDFLK NWIIDSLPRV LKTLRINPAA NPSDPEEVLK LVEAKFRLQA DIIKFLAVQG 600 LFSASLGTEV TSFELQEKFM WPKVATSSSL CRSCIEQLQL LIEDAQKGDE SRLLPSGPDS 660 NDLGSFFICF LNTMCNIPSV SLSRALSSED EKAFKNLLAM ETRLYQEERR IGHGLEANKL 720 HALRYLLIQL LLQLVLRPQE LYDAAAELII CCKKAFPEVA QHESVDEEDE LDDDGSPELM 780 DVLMDTLLSL LPQSSSPMCY AIEQVFKFFC DDITDDGLLR MLHIVKKDLK PPRRQVAEAD 840 DDDSDDEDEE DLFGIEDTEE ANEPKTLGSE DSDDGVDDSE AVTGVKAAEE HKEKGEEPSA 900 SDAYESDMDD DAMFLMDSYI AQLLKERRDS AGSDTAQSQL NLFKLRVLTL LEIYLQRNPG 960 DPRVVTVYSY LIQAFVNSHS SDGRKQLGER IRGIMQKKIF RGKECPRGSE VEISTLENLL 1020 AKSLRLAFRS RINAVSLVAE NAAFWLLKII NSGGFPPSEM EQVFEILRRL LDDYFDNKKS 1080 RVKSVFIKEV FRRHPWVARQ LFDLLLEKCN GAKSEFRRIE ALELVDSALK SLALSQKGDA 1140 SSDTSKFLKK HVPSFSGLIC QLLSRFPEKQ SRRAEVRRFC CKILDALTSH NLLKSFIKQL 1200 TPEAYSACES KLGNQFHLLK KPAKQLEVIW IGPTNCHGKK PARFVNVHRA FKASNVTKIL 1260 KVLPPANRRD AVTSICFEGD VQLQDSVCQT VGYK*

Sequence ? help Back to Top

Protein Sequence Length: 1295 aa Download sequence Send to blast

MAGKKRTSRS AELSESESGD GSDGDGAPAT LQKSVKPMER RKKRKELDKA RHSAAAEGEK  60
PPKPKAESSA VRGPGGQAPP SAHGGGLPVH LFMDLTSLES SVREAAAEGL ATELRKSQEE  120
FERFGGEHRD SGRGAVPLEA EKNDGLDNCA PPVRYAVRRL IRGLASSREC ARQGFALGLA  180
IVVGSVPAIR VDSIMKLVVQ FLEVSSSRKG QEVRDSLIGR LFAYGALARS GRVAAEWASQ  240
KSSTSIKEIL AQVTLLAGRK RYLREPAVSV ILDLVEGLPV EVLLDQVIES DGIREWFEKA  300
PEVGDPDALF LALRLQEKES TFCLPRVHSI WYVLIDILLP ADVISHDEDS SSHPNSSKKQ  360
KRARKANSAE EIAKNFRCFH EVVIEGCLLL SSHDRKHLVF DILLLLLPRL PKTFIEIVLS  420
HKLVHCLMDI LSTKSSWLYS AAQKFMGELV SWVGNDDDRR VAVILSLAKH SNCRFDCITQ  480
TNTVRELISR FYTCSGRVLL AQNLMSLFVD ESGLADEPSD ASQTTDENSE RDSPEGKDPG  540
GILGNTDFLK NWIIDSLPRV LKTLRINPAA NPSDPEEVLK LVEAKFRLQA DIIKFLAVQG  600
LFSASLGTEV TSFELQEKFM WPKVATSSSL CRSCIEQLQL LIEDAQKGDE SRLLPSGPDS  660
NDLGSFFICF LNTMCNIPSV SLSRALSSED EKAFKNLLAM ETRLYQEERR IGHGLEANKL  720
HALRYLLIQL LLQLVLRPQE LYDAAAELII CCKKAFPEVA QHESVDEEDE LDDDGSPELM  780
DVLMDTLLSL LPQSSSPMCY AIEQVFKFFC DDITDDGLLR MLHIVKKDLK PPRRQVAEAD  840
DDDSDDEDEE DLFGIEDTEE ANEPKTLGSE DSDDGVDDSE AVTGVKAAEE HKEKGEEPSA  900
SDAYESDMDD DAMFLMDSYI AQLLKERRDS AGSDTAQSQL NLFKLRVLTL LEIYLQRNPG  960
DPRVVTVYSY LIQAFVNSHS SDGRKQLGER IRGIMQKKIF RGKECPRGSE VEISTLENLL  1020
AKSLRLAFRS RINAVSLVAE NAAFWLLKII NSGGFPPSEM EQVFEILRRL LDDYFDNKKS  1080
RVKSVFIKEV FRRHPWVARQ LFDLLLEKCN GAKSEFRRIE ALELVDSALK SLALSQKGDA  1140
SSDTSKFLKK HVPSFSGLIC QLLSRFPEKQ SRRAEVRRFC CKILDALTSH NLLKSFIKQL  1200
TPEAYSACES KLGNQFHLLK KPAKQLEVIW IGPTNCHGKK PARFVNVHRA FKASNVTKIL  1260
KVLPPANRRD AVTSICFEGD VQLQDSVCQT VGYK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	45	RKKRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254539	0.0	AC254539.1 Spirodela polyrhiza clone GNAS837-M21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916330.1	0.0	rDNA transcriptional regulator pol5
Refseq	XP_010916332.1	0.0	rDNA transcriptional regulator pol5
TrEMBL	A0A1D1ZGS8	0.0	A0A1D1ZGS8_9ARAE; DNA polymerase V
STRING	XP_008811975.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	5e-11	LBD family protein

Link Out ? help Back to Top
Phytozome	Spipo2G0051100