PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0044600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Trihelix

Protein Properties

Length: 282aa MW: 32390.2 Da PI: 5.0603

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0044600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64	3.3e-20	21	103	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe+ Li+a++e++ +l+rg+lk+++Weev++ + ++ g+ r s +qC++k+e+l++ry+++k+++ s++p+f++++ Spipo2G0044600 21 WLDQETAFLIDAYEERWYALKRGQLKAHQWEEVASGVaARLGLIRppkSGTQCRHKIEKLRQRYRAEKQRSVP------SRWPFFERMD 103 *********************************9977888865444889*************99986......58*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-22	19	105	No hit	No description
SMART	SM00595	3.8E-7	28	110	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVVGEGAAAP PRKHGGPGQP WLDQETAFLI DAYEERWYAL KRGQLKAHQW EEVASGVAAR 60 LGLIRPPKSG TQCRHKIEKL RQRYRAEKQR SVPSRWPFFE RMDRLEHGPS PISVRPPPPH 120 PPPVAEGHKE EEEDEEEDEG SEGVDGSGED GAEEEEEEEE EEEGFNGNTR SINGILNEDE 180 LLHQKISRSK SYGEEDISGD GERGALRELV VTVKRFREGF VRMEMKRMEL MREMERDWIQ 240 METRRAEMLV ESQRHLFDTI SRAKCLRMPW LHFVHAKASS I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937395.1	2e-69	uncharacterized protein LOC105056785
TrEMBL	A0A1D1Z1T2	6e-87	A0A1D1Z1T2_9ARAE; Zinc finger protein with KRAB and SCAN domains 2
STRING	GSMUA_Achr6P04170_001	2e-58	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-23	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Spipo2G0044600