PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0042800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CAMTA
Protein Properties Length: 771aa    MW: 86406.9 Da    PI: 6.8879
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0042800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1140.74.2e-4438536118
            CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                     sgsl+L++rk++ryfr+DG++w+kkkdgktv+E+he+LKvg+++vl+cyYah+ee ++fqrr+ywlLee++ +ivlvhy+ev+
  Spipo2G0042800   3 SGSLFLFDRKVLRYFRRDGHNWRKKKDGKTVKEAHERLKVGSIDVLHCYYAHGEESENFQRRSYWLLEEDFMHIVLVHYREVQ 85 
                     8*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010769.7E-43185IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143761.42190IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-36383IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.7E-5196283IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.76E-18197283IPR014756Immunoglobulin E-set
PfamPF018336.9E-7197282IPR002909IPT domain
CDDcd002046.94E-12383492No hitNo description
PROSITE profilePS5029715.379387494IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-15387494IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-15389495IPR020683Ankyrin repeat-containing domain
SMARTSM002480.18433462IPR002110Ankyrin repeat
SMARTSM00248260472501IPR002110Ankyrin repeat
SMARTSM000154.5600622IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041603630IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029603621IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-6603644IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.18623645IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.968624648IPR000048IQ motif, EF-hand binding site
PfamPF006121.6E-4626643IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MFSGSLFLFD RKVLRYFRRD GHNWRKKKDG KTVKEAHERL KVGSIDVLHC YYAHGEESEN  60
FQRRSYWLLE EDFMHIVLVH YREVQVPISE ASSVLKPNVD AKSAPSKVGS GKYSLLKQLS  120
MDIANSENDG GLRKCDSFCR WMSKELGEVD DSQMQLSTAH YWSPVEDENV VEDSGMPHND  180
DMYLLSPSLS QDQLFSIIDF SPHWAYAGLE TKVIVTGSFL KDKIDVDKCK WSCMFGEVEV  240
PAEVLADGVL RCHAPPHKPG RVHFYVTCSN RLACSEIREF EYRVSCPQFM EISDSYGGSA  300
SEYKLHIRLE KLLSIEFDDH QKSVSGLSGA KLHLSNKVNS LLIENDDDWS IMLNPLSNKE  360
FLSDKASNQL LEKLLKQKLR AWLLYKIADE GKGPNVLDEE GQGVLHLASA LGYDWAIAPT  420
VAAGVSIDFR DVHGWTALHW AASCGRERTV IALFTLDAAP GALTDPTPKF PSGRTPADLA  480
SINGHKGIAG FLAESSLTRH LSILTLKDLG TSSVTEASSL EAFEDVARAA AQTIDRNMQA  540
GLSAIRKAAQ AAARIHQVFR IDSFHRKKLS ELADDKFGMS DEHALSLVSV KTNKSGPSDE  600
PVAAAIRIQN KFRGWKGRKE FLITRQRIIK IQAHVRGHLV RKHNANNILW SVGIVEKIIL  660
RWRRKGSGLR GFRSQGLADG PGTHDQTTHK DDDDFLREGR RQTEARLEKA LARVKSMVQY  720
PDARDQYQRL LTVAEEFQES KAIIERVLND PGDGEGDIMF DELLGDENLS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704852.10.0calmodulin-binding transcription activator 3 isoform X3
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A1D1ZLF80.0A0A1D1ZLF8_9ARAE; Calmodulin-binding transcription activator 3
STRINGXP_008795547.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]