PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0030200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 202aa    MW: 22009.4 Da    PI: 4.7082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0030200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-191060155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGVr +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa ++l+g
  Spipo2G0030200 10 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEKAARAFDAAVLCLRG 60
                    89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.54E-261069No hitNo description
PfamPF008479.9E-121060IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-191070IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-271170IPR001471AP2/ERF domain
PROSITE profilePS5103222.4311169IPR001471AP2/ERF domain
SMARTSM003807.9E-301175IPR001471AP2/ERF domain
PRINTSPR003674.2E-101223IPR001471AP2/ERF domain
PRINTSPR003674.2E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEMERGEGRS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTAEKAARA FDAAVLCLRG  60
RKGGAFNFPQ NLPDIPVRRS LPPAEVQAVA SRFANEAPPA APPVDDGAGC HSGPESPERW  120
TTSGGTAESG GEESLDWSFL DFAGSASTEH ASADWPGFYD MIDDFPCEFF PSLAALPGVP  180
DFMEEHGGAS FYAQSSLLWN F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1311701473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273875.15e-54PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1D1ZGZ51e-57A0A1D1ZGZ5_9ARAE; Ethylene-responsive transcription factor ERF017 (Fragment)
STRINGXP_010273875.12e-53(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-43ERF family protein