PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0027800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CAMTA
Protein Properties Length: 1036aa    MW: 117423 Da    PI: 7.4609
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0027800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1169.35.7e-53541693117
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      +e k rwl+++e+++i+ n+++++l+ +++ +p+ gsl+L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+een++fq
  Spipo29G0027800  54 EEaKGRWLRPSEVCEIIRNYQSFHLKPDPPYKPSGGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKSGSVDVLHCYYAHGEENENFQ 147
                      45599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylev 117
                      rr+yw+L+ +le+ivlvhy+ev
  Spipo29G0027800 148 RRSYWMLDGHLEHIVLVHYREV 169
                      ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.42549175IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7052170IPR005559CG-1 DNA-binding domain
PfamPF038599.1E-4855168IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.8E-6484573IPR013783Immunoglobulin-like fold
CDDcd001020.00399485572No hitNo description
PfamPF018331.2E-4486570IPR002909IPT domain
SuperFamilySSF812961.54E-17486571IPR014756Immunoglobulin E-set
PfamPF127966.1E-7664744IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-18668779IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.7E-17671779IPR020683Ankyrin repeat-containing domain
CDDcd002043.13E-14674777No hitNo description
PROSITE profilePS5029717.555674779IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.591718750IPR002110Ankyrin repeat
SMARTSM002480.0014718747IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-8879941IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001512890912IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242891920IPR000048IQ motif, EF-hand binding site
PfamPF006120.014894911IPR000048IQ motif, EF-hand binding site
SMARTSM000150.11913935IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.682914938IPR000048IQ motif, EF-hand binding site
PfamPF006120.0069917935IPR000048IQ motif, EF-hand binding site
SMARTSM000151709881010IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.9259901018IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MVFIDRAPLE FHKWAPHTFE PTRKKLALCS FSHVTWMQFL LLPSSVSDIT QILEEAKGRW  60
LRPSEVCEII RNYQSFHLKP DPPYKPSGGS LFLFDRKALR YFRKDGHRWR KKKDGKTVRE  120
AHEKLKSGSV DVLHCYYAHG EENENFQRRS YWMLDGHLEH IVLVHYREVN EGSKPDVPHL  180
LSSDSGIQTH SWGVQATIAG QPSYASSPST VAWSEQAPSS EFDDVDSGKE FSASPLVEPI  240
TDSGFQIAPT AENVTFDKST SIRSSASRPY TRRQTDSGLW NSFSANDTVA GNIVSRKSHE  300
TDHRSSQDID FHNFSERVDE GPLVSGFHNS PSHIPLGIYS DADDFKYGVN RNVQVLPHRC  360
LQRFVDKDER TFRVVQKNEN TEYAACFPDE KHASDWANHE NDDEDLCGKI DGQQEGLKRL  420
DSFGRWMTNE IGEYCDVSLA GTDSRNFWNA LDSQNDDKVT SSLSRQMQLD IGSLAPSLSQ  480
EQLFSILDFS PDWAYSGSET KVLVAGSFLG EVQHNDIKWC CMFGEVEVSA EVLTRNVLRC  540
HAPSHPPGRV PFYVTRSDRL ACSEIREFEY RDNFKGDLNF SWKTDQNDAL HLQIRFAKIL  600
SIGMDRNKLC FVENCPKCTV KEFFSVLNEE KNEWEKMERS CATFQSYYLN PRDILIQKLL  660
KTKLYEWLLT KSHEDGKGPN VLDEDGQGVI HFAAALGYEW AMKPIIAVGV SPNFRDAHGW  720
TALHWAAYFG REETVATLVT LGSSPGALTD PTRKYPEGQT AADLASTRGH KGISGYLAEV  780
DLAGQLSLLV LKESVMDSVS ATLAGEKAIE TVGEDNTGTL DIYEGEKLSL RGSLAAVRNS  840
AQAAARIQAA LRVHSFCQMQ LEKNYGITNE ERLVSSLNGK SQKATHFNDS LHTSAVKIQQ  900
KYRGWKGRRE FLKIRNRIVK IQAHVRGRRV RRQYKKIVWS VGIVEKAILR WRRRGRGLRG  960
FRAEEANGAE ETDEYDFLHL GRKQKAAGVE RALARVQSMA RRPDARDQYM RMLARSRRSD  1020
EGGRRETDPP TSTSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A4e-1167477325118Engineered Protein
4hb5_B4e-1167477325118Engineered Protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938166.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A1D1Z0140.0A0A1D1Z014_9ARAE; Calmodulin-binding transcription activator 1
STRINGAquca_003_00380.10.0(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein