PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo29G0021500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 19000.5 Da PI: 8.8087 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Spipo29G0021500 47 FECKTCNRRFPSFQALGGHRASH 69 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Spipo29G0021500 97 HECSICGLEFSIGQALGGHMRRH 119 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.56E-9 | 45 | 119 | No hit | No description |
Pfam | PF13912 | 2.6E-13 | 46 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.847 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-10 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.32 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MKRLRTGREG EVESINLANV LVLLSRGSGG GGAVALEAAN HGQGRVFECK TCNRRFPSFQ 60 ALGGHRASHK KPRLGGEQNG QAAGPAPAAT PGKPRVHECS ICGLEFSIGQ ALGGHMRRHR 120 AASDSLRAAA PPGEAASPPV GEKQTELGLA LELDLNLPPS NSEADFRSLN LGLGIPMVDC 180 FH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402337.1 | 9e-55 | PREDICTED: zinc finger protein ZAT12-like | ||||
Refseq | XP_022995602.1 | 2e-54 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A444G6S6 | 3e-53 | A0A444G6S6_ENSVE; Uncharacterized protein | ||||
TrEMBL | M0T2H9 | 2e-53 | M0T2H9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P28550_001 | 3e-54 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo29G0021500 |