PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0019400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YB
Protein Properties Length: 145aa    MW: 15834.8 Da    PI: 4.8332
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0019400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.61.3e-5632126195
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian++rimkk+lPanaki+kdaketvqecvsefisf+tsea dkcq+ekrktingddllwa+atlGfe+y+epl++yl+kyrele
  Spipo29G0019400  32 VREQDRFLPIANIGRIMKKALPANAKIAKDAKETVQECVSEFISFITSEACDKCQKEKRKTINGDDLLWAMATLGFEEYIEPLRIYLQKYRELE 125
                      69*******************************************************************************************9 PP

            NF-YB  95 g 95 
                      g
  Spipo29G0019400 126 G 126
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5329126IPR009072Histone-fold
SuperFamilySSF471135.28E-4035127IPR009072Histone-fold
PfamPF008085.8E-2938102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-216684No hitNo description
PROSITE patternPS0068506985IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-2185103No hitNo description
PRINTSPR006151.5E-21104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAESSAPGQG PSSPEAGGSH EYAGEGSPQS NVREQDRFLP IANIGRIMKK ALPANAKIAK  60
DAKETVQECV SEFISFITSE ACDKCQKEKR KTINGDDLLW AMATLGFEEY IEPLRIYLQK  120
YRELEGPDMM QSQGQYLNGS GGRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4631123193NF-YB
4awl_B1e-4631123294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4631123294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767971.11e-71PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
RefseqXP_009767972.11e-71PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
RefseqXP_016510778.11e-71PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
RefseqXP_016510785.11e-71PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3
SwissprotQ8VYK41e-63NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S4DBH63e-70A0A1S4DBH6_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X3
TrEMBLA0A1S4DBQ23e-70A0A1S4DBQ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X2
TrEMBLA0A1U7VIT33e-70A0A1U7VIT3_NICSY; nuclear transcription factor Y subunit B-10-like isoform X2
TrEMBLA0A1U7VSP93e-70A0A1U7VSP9_NICSY; nuclear transcription factor Y subunit B-10-like isoform X1
STRINGXP_009767971.15e-71(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.35e-66nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]