PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo29G0018400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

S1Fa-like

Protein Properties

Length: 157aa MW: 17087.5 Da PI: 10.6619

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo29G0018400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	122.5	1.4e-38	90	156	5	70
S1FA 5 kvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ea kGlnP +ivl+vv glllvf+vgny+lyvyaqknlP +kkkPvskkk+++e+lkqGv++PGe Spipo29G0018400 90 REEAaKGLNPAVIVLVVVVGLLLVFFVGNYALYVYAQKNLPQKKKKPVSKKKMRKERLKQGVSAPGE 156 45555*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	4.0E-4	88	156	No hit	No description
Pfam	PF04689	3.0E-37	92	156	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MTDAKSLAAV KFQSVLIDGC SKGDKGRDRL SAMDKKVISF LDLVSGSVTW VLIQVLFSLN 60 ERLLVSLPFL FLPISGPCVW NLVGKGNVIR EEAAKGLNPA VIVLVVVVGL LLVFFVGNYA 120 LYVYAQKNLP QKKKKPVSKK KMRKERLKQG VSAPGE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Link Out ? help Back to Top
Phytozome	Spipo29G0018400