PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo27G0011400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 160aa MW: 17246.5 Da PI: 8.4845 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.5e-07 | 66 | 87 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f rtG+C++Gd C++ H+ Spipo27G0011400 66 VCNNFVRTGFCQFGDGCRYFHP 87 5******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 3.2E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 7.94E-14 | 4 | 45 | No hit | No description |
Pfam | PF06220 | 1.6E-10 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 13.319 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 65 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-6 | 66 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-5 | 66 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MPLGKYYCDY CEKQFQDTPL ARKRHLEGAQ HQRAKALWYA SVRSAEVDGS GPGAGAFGRG 60 LPPPGVCNNF VRTGFCQFGD GCRYFHPTRN LQNDNQVILG PDAAASVHSA SPGRSPLMRS 120 SALGNMTGDQ VTVSWGILPL SLRPPLEGGY PHLPFVDWG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022720.1 | 2e-54 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Swissprot | Q0JP11 | 1e-46 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A1D1YW76 | 2e-69 | A0A1D1YW76_9ARAE; Zinc finger CCCH domain-containing protein 3 (Fragment) | ||||
STRING | VIT_14s0060g00610.t01 | 1e-51 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 6e-40 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo27G0011400 |
Publications ? help Back to Top | |||
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