PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo26G0022200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WOX | ||||||||
Protein Properties | Length: 427aa MW: 46027.3 Da PI: 6.9062 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.8e-18 | 84 | 144 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ Spipo26G0022200 84 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRKIRTQLqeygQVGDANVFYWFQNRKSRSKH 144 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 111.3 | 5.2e-36 | 83 | 146 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P++eei++i+++L+eyG+++d+NVfyWFQNrk+R+++kq Spipo26G0022200 83 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRTQLQEYGQVGDANVFYWFQNRKSRSKHKQ 146 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.05E-12 | 79 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.673 | 80 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-9 | 82 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-7 | 83 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.64E-9 | 83 | 146 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 84 | 144 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MSQFRGCFSP HLTMFGQSPT TSPVVRAIMA SSNRHWPSLF KSKPCNSHLQ WPHDINSSSL 60 LSSACQKTPY PSVPPCEERS PEPKPRWNPK PEQIRILEAI FNSGMVNPPR EEIRKIRTQL 120 QEYGQVGDAN VFYWFQNRKS RSKHKQRHLQ ASRPHSRFTN TTPAATASAG SSSSSSSSER 180 STGSDKTLLS PTIGGASATT DTSNSPVPPV PQPFFQQANG DFYDEPFFFH GLPEYCFSTA 240 DFACLVGVPD GGLGICHGLL TDLMSHERCN KGGDEEATMK MHLHHSYALA AASSAPSSAT 300 TADVASAATA KIIAATGPST ADTMTDIIHG IGTCAPRSTV FINGVAFDVG TGPVNLREAF 360 GEHTVLLQSS GHPVLVDDWG VTLHPLQHGA SYYLRVPSSH LRPIHAVDDH PSADGTPHFD 420 GEPSEE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010918996.1 | 1e-129 | WUSCHEL-related homeobox 8 isoform X1 | ||||
TrEMBL | A0A2H4A099 | 1e-123 | A0A2H4A099_PHODC; WUSCHEL-related homeobox 9 | ||||
STRING | XP_008811551.1 | 1e-128 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-57 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Spipo26G0022200 |