PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0017100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 346aa    MW: 38326.8 Da    PI: 7.6472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0017100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34e-114569226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     +++ C +++ t tCk+Gd+CkF H+
  Spipo26G0017100 45 GEKDCAHYMLTRTCKFGDNCKFDHP 69
                     7889********************9 PP
2zf-CCCH37.63.7e-1296122127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++f++t  Ck+G+rCkF+H++
  Spipo26G0017100  96 PGEPDCPYFMKTQRCKFGPRCKFNHPK 122
                      5789*********************96 PP
3zf-CCCH34.72.9e-11142166327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++a+tG Ck+G++C F+H++
  Spipo26G0017100 142 EPICSYYAKTGKCKFGANCIFHHPK 166
                      799********************96 PP
4zf-CCCH37.44.2e-12220244226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++  C+f+++tG CkyG++C+++H+
  Spipo26G0017100 220 GEQDCPFYLKTGSCKYGATCRYNHP 244
                      6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-44370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6764371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-54470IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-94569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44968IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35695123IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-695122IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-997122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5101121IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6142167IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5144165IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638218246IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9220244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5221245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5224243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
LFHQTLLGNH NSIGQNEALF STNPLLKRPR FEIGSHLPIY PQRPGEKDCA HYMLTRTCKF  60
GDNCKFDHPL WVPEGGIPDW KEVPVVNTPE SLPERPGEPD CPYFMKTQRC KFGPRCKFNH  120
PKDKPQVSEM ADVSVLPERP SEPICSYYAK TGKCKFGANC IFHHPKDIQL PSSGQDPVSG  180
EHTETTVNDG EANGESKAGN PLSFAPAMLH NSKGLPVRPG EQDCPFYLKT GSCKYGATCR  240
YNHPDRNAFN PIAASAFLHS PSTNLSIGVV NPAVSLLSNI DTRFSQTTLG VGPILYPQRP  300
GQTECDVHIF KLLIVRSVSG EEKLSWQLNG LVFLCLLAYV VLLQLL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.11e-162PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-132C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1D1Z0121e-169A0A1D1Z012_9ARAE; Zinc finger CCCH domain-containing protein 37
STRINGXP_010260864.11e-162(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-135floral homeotic protein (HUA1)