PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0011000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 371aa    MW: 39703.6 Da    PI: 7.0826
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0011000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.82.5e-23233295163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK+ae+eeL+ekv++L+aeN+aLk+e+++l++++akl++e+
  Spipo26G0011000 233 ERELKRERRKQSNRESARRSRLRKQAETEELAEKVEALKAENMALKSEISRLSENSAKLRQEN 295
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.5E-30193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-9111169No hitNo description
Gene3DG3DSA:1.20.5.1706.6E-18230294No hitNo description
SMARTSM003385.7E-22233297IPR004827Basic-leucine zipper domain
PfamPF001704.7E-21233295IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.564235298IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11236293No hitNo description
CDDcd147029.05E-22238286No hitNo description
PROSITE patternPS000360240255IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGNGEAGTPS KTEKTSSTVQ EQSGVQQYPD WAAMQAYYGP GIAMPPHYFG TTAVTSGHAA  60
HHPYMWGPQP MMPPFGTPYP AIYPHGGVYP HPSSSLTATQ EKTTKTSNNK DHGQTKKLKG  120
PDGLPVSVCN GRDKNEAGGG SQTRSQSTED GTEGSSDGSD GNNENQTHGK LVLEDSAAGK  180
PVAIRTVPGP EIRVPSAAKA KISVPVPLSS NATPPGRDGG HPDLWVHRFP QDERELKRER  240
RKQSNRESAR RSRLRKQAET EELAEKVEAL KAENMALKSE ISRLSENSAK LRQENSALMA  300
DQKAECSPDK VEQEAEASPR AGTENFLSKI NSSNSTAGRS EQPDNETQES SGKLQQLLES  360
KPKADAAIAG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249255RRSRLRK
2249256RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798658.11e-105common plant regulatory factor 1-like
TrEMBLA0A1D1YGV41e-123A0A1D1YGV4_9ARAE; Common plant regulatory factor 1
STRINGXP_008798658.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-60G-box binding factor 3