PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo25G0018200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 450aa    MW: 47662.1 Da    PI: 8.4744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo25G0018200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.7e-17224273255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lr l+P      ++K +Ka+ L +++eYI+ Lq
  Spipo25G0018200 224 RSKHSATEQRRRSKINDRFQILRNLIPLT----DQKRDKASFLLEVIEYIQALQ 273
                      889*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-22220294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-19222299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.666222272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-16224277No hitNo description
PfamPF000101.8E-14224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MELHGKAAVT HDFLSLHKEP LLQNSRPPPS PGHGVEQRDT GGAGRAAAID LNVAAAAAAA  60
AAAGPSAACS EDGLAGGFGR PVVKPEWSSS TRGPTSPGGR TATQEEETEG RRRHSRSPGR  120
VFKPWREVEV ARGGLHLQQW HSPSSAAGRS GTSGVLPPSS GQQRDARDMM DTSSRHKGFA  180
DDDEEDDEDF LKETSSRKGL TIKVDGSSNN GDGINDDRKP STPRSKHSAT EQRRRSKIND  240
RFQILRNLIP LTDQKRDKAS FLLEVIEYIQ ALQEKVQKYE SPYSGWNQDN VKLMPWYAPA  300
AGGPSSGFFH TQPRMENLSA QGQAQWPRSS SSAADGRAGG GAADVFNGGD DLVIDEGTIS  360
LSGAYSDGLV SALTQALQGS GVDLTQASIS VRINLGRQAV GRPASSSKEP DGPSSSNQAA  420
AGHSRVASSG EDSEQQRPSK RNRRRSAAG*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9CAA48e-47BIM2_ARATH; Transcription factor BIM2
STRINGORUFI09G14830.19e-59(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.39e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]